Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5669 ATGGATCTTGAGACAAAGCTCAGAGAAAACTATGTCTCACAACCTTTTGGGGTTCCCTCATCTCAGGGGATATTCCTGCATGATTTTCACCAGATTGATCATCAATTTCAACATGGGAATAATGGTTCCTCATCCAATCCCATTCAAACACCAAATTTTGACCCTTGTGGTAATTTTAACTATCAATGTTCACCAGTAGGTTTTGATAATGCTTATCATGAGTTGAAGCCTTTTGTGGATCAGAATAGTGGCAGTGGTCATGCTCATGTTATGGACAATTTCCTATATGGAGGTTTTGGCTTCAATCTCCCTCAGAGGAATCAACTGGATATGATGGTAGCAAACCAAAGTTATTTTCAACTTAATCCTCAAGAAATAATCAAGCCTGTGAATTTTGTTGTACCAGATGAAGTCTCAGGCATATCATCAGTGAATTATAGCAAAAGAGATGTCATGAACAAAAACAATAGGGCATATCCAATAACTAGAAGGTCATACAAAGTTCGCAAGAAGTCCAACATAGTAAAGGGGCAATGGACAGCAGAAGAAGATGGGTTGTTGATTCAGCTGGTTGAACAATATGGATTGAGGAAGTGGTCCCATATTGCTCAGATATTGCCTGGAAGAATAGGAAAACAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCTGATATCAAGAAGGACACATGGAGTGATGAAGAGGACAAGATACTGATCCAAGCTCATTCAGAGATAGGAAACAAATGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACAGAAAACTCAATAAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGTCGTTCAAAGTACCCCAGAGGCACTCTTCTTCAAGAATACATCAAGAGCCTGAACCTTGACAAAAATCCACCAATAGATTATAGAAGAAGATCTTCAGCAAATGCTATTGCCATGAAAAACAAAATTGGTAGTAATAGCAAAGTAGCATCAGCACCACAACAAGCTCGGCCTCAGGAAACAGATCAATTTTGTTTGGCACCGAATTGCGATTTCAACGAGGTCCCGGATTTTTGTTTTGATGAAAATTTGTTTGAAGAAGGGTGCAGCATTGATTCTCTGCTCATGGATGAGAAAGAATTTGAAGGAAAAATGCAATGTGTTCCTACTATGGAAGGAAAAGATTGTGATCAGGGAGGAACCAGTGTTGTTAATCTTATTGAGACAGAGATGCCAATGGATATTATGGAATCCATGCTTGGGGTTGAAGTTAAGAAAGAGATGGATTTAGTGGAGATGATGTCTCAAGTTAATGGCACAGTTCAATAG 1332 0.3926 MDLETKLRENYVSQPFGVPSSQGIFLHDFHQIDHQFQHGNNGSSSNPIQTPNFDPCGNFNYQCSPVGFDNAYHELKPFVDQNSGSGHAHVMDNFLYGGFGFNLPQRNQLDMMVANQSYFQLNPQEIIKPVNFVVPDEVSGISSVNYSKRDVMNKNNRAYPITRRSYKVRKKSNIVKGQWTAEEDGLLIQLVEQYGLRKWSHIAQILPGRIGKQCRERWHNHLRPDIKKDTWSDEEDKILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPIDYRRRSSANAIAMKNKIGSNSKVASAPQQARPQETDQFCLAPNCDFNEVPDFCFDENLFEEGCSIDSLLMDEKEFEGKMQCVPTMEGKDCDQGGTSVVNLIETEMPMDIMESMLGVEVKKEMDLVEMMSQVNGTVQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5669 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 277 IPR017930 -
Lja1g5669 443 PANTHER MYB PROTEIN-RELATED 41 376 - -
Lja1g5669 443 PANTHER BNAC03G62830D PROTEIN 41 376 - -
Lja1g5669 443 CDD SANT 230 273 IPR001005 -
Lja1g5669 443 SUPERFAMILY Homeodomain-like 173 269 IPR009057 -
Lja1g5669 443 ProSiteProfiles Myb-like domain profile. 171 222 IPR001005 -
Lja1g5669 443 ProSiteProfiles Myb-like domain profile. 223 273 IPR001005 -
Lja1g5669 443 CDD SANT 179 222 IPR001005 -
Lja1g5669 443 Pfam Myb-like DNA-binding domain 179 236 - -
Lja1g5669 443 Gene3D - 175 227 - -
Lja1g5669 443 Gene3D - 229 290 - -
Lja1g5669 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 226 IPR017930 -
Lja1g5669 443 SMART sant 227 275 IPR001005 -
Lja1g5669 443 SMART sant 175 224 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5669 Lja-Chr1 100074377 100076314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5669 108 378 MYB Transcription Factor Family AT4G18770 57.951 5.81e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g5669 Myb_DNA-bind_6 1.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5669 K09422 - gmx:100816653 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5669 1 100074377 100076314 Lja4g2288 4 25251764 25253798 ECH
Lja1g5669 1 100074377 100076314 Lja1g5669 1 100074377 100076314 ECH
Lja1g5669 1 100074377 100076314 Lja1g3738 1 46880055 46884111 PCT
Lja1g5669 1 100074377 100076314 Lja4g2288 4 25251764 25253798 PCT