Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5654 ATGAAGAATTCTTACTGGCATAAGCAAATATGGAGCAGCGGCGGCGGCGGCGGGGGGAAGGCAGGGAGGAGGCTATCGTTGGGTGAGTACAAGAGGGCGGTGTCATGGTCGAAGTATCTGGTGTCTCCGGGGGCGGCGATAAAGGGGGAAGGGGAAGAGGAATGGAGTGCGGACATGTCGCAGTTGCTGATTGGAATGAAATTTGCTTCTGGGAGACATAGTAGGATTTATAAAGGGGTTTATAAGGAGAGAGATGTGGCGATTAAGCTTGTGAGTCAGCCGGAGGAGGATGAGGATTTGGCTTGTTTTCTTGAGAAGCAGTTTACTTCTGAGGTTTCTTTGTTGCTTCCTTTGCGCCATCCCAATATCATTACTTTCGTTGCTGCTTGCAAGAAACCTCCAGTCTTTTGCATAATTACTGAATATTTGGCTGGGGGCTCATTGAGAAAATACCTACATCATCAAGAACCGCATTCAGTTCCGCTCCATCTTGTTCTGAAATTAGCCCTAGACATTGCGCGGGGTATGCAGTATCTTCATTCTCAAGGGATAATTCATAGGGATCTCAAATCAGAGAATCTCCTGTTAGGGGAAGATATGTGTGTAAAAGTAGTAGATTTTGGCATCTCCTGCCTGGAATCTCAGTGTGGCAGCGCGAAGGGATTTACCGGAACCTACCGATGGATGGCTCCTGAAATGATCAAAGAAAAGCATCACACCAAGAAAGTAGATGTGTATAGTTTTGGCATAGTTCTATGGGAGCTTTTAACTGGACTGACACCATTTGACAACATGACACCAGAGCAGGCGGCATATGCAGTTTCCTACAAGAATGCAAGACCACCATTGCCACCTGAATGTCCTTGGGCATTTAGCAACCTCATTAATAGATGCTGGTCAAGCAATCCAGATAAAAGGCCACATTTTGATGAGATAGTTTCCATTTTGGAGAAGTACACAGAATCACTTAAGCAGGATCCAGAATTTTTTGCAACTTACAAACCGCGTCCTGCTAGTACAATTCTGGGATGGTTTCCAAAATGCATTGCTTGCCTTATGTCTGCTGCTTGCAAAGCGTAG 1080 0.4565 MKNSYWHKQIWSSGGGGGGKAGRRLSLGEYKRAVSWSKYLVSPGAAIKGEGEEEWSADMSQLLIGMKFASGRHSRIYKGVYKERDVAIKLVSQPEEDEDLACFLEKQFTSEVSLLLPLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHHQEPHSVPLHLVLKLALDIARGMQYLHSQGIIHRDLKSENLLLGEDMCVKVVDFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTGLTPFDNMTPEQAAYAVSYKNARPPLPPECPWAFSNLINRCWSSNPDKRPHFDEIVSILEKYTESLKQDPEFFATYKPRPASTILGWFPKCIACLMSAACKA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5654 359 Gene3D Transferase(Phosphotransferase) domain 1 145 335 - -
Lja1g5654 359 Gene3D Phosphorylase Kinase; domain 1 52 143 - -
Lja1g5654 359 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 338 - -
Lja1g5654 359 Pfam Protein tyrosine and serine/threonine kinase 65 316 IPR001245 GO:0004672|GO:0006468
Lja1g5654 359 SUPERFAMILY Protein kinase-like (PK-like) 52 316 IPR011009 -
Lja1g5654 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Lja1g5654 359 CDD STKc_MAP3K-like 69 316 - -
Lja1g5654 359 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672|GO:0006468
Lja1g5654 359 PRINTS Tyrosine kinase catalytic domain signature 178 196 IPR001245 GO:0004672|GO:0006468
Lja1g5654 359 PRINTS Tyrosine kinase catalytic domain signature 140 153 IPR001245 GO:0004672|GO:0006468
Lja1g5654 359 PRINTS Tyrosine kinase catalytic domain signature 224 234 IPR001245 GO:0004672|GO:0006468
Lja1g5654 359 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Lja1g5654 359 ProSiteProfiles Protein kinase domain profile. 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5654 359 SMART serkin_6 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5654 359 PANTHER SERINE-THREONINE PROTEIN KINASE 1 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5654 Lja-Chr1 99376159 99381226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5654 35 325 MAP Kinase Kinase Kinase AT1G62400 64.068 1.20e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja1g5654 PK_Tyr_Ser-Thr 3.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5654 - - gmx:100807757 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5654 1 99376159 99381226 Lja1g5654 1 99376159 99381226 ECH
Lja1g5654 1 99376159 99381226 Lja4g2265 4 24908766 24912603 PCT