Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5650 ATGGCCGTCAGAGGAGTCTATTTCAAATGGTACGATGGCTTTTTCTTGTCCATGCTCGCCATCAGTGTAGCTATTGTGGCTATTAATTGGAAGCGGTACCATTCGTGTGCTCACCCGTTGCACATTTGGATTGTGGTTCACTACACTACTGTTTTTGTTTTCCGGGTTTTGATGTTTGTTGATAATGGCCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAGTAGTTGTGCTTTCAATCCTTTCAATGCTTTTCTACCCATTTCTTTGGGCTTGGACAATAACTGGTACCCTGTGGTTCAACAATTCTAAAACCTGTTTGCCTGGACTGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGTCTCCTTTGTATTGCTAGCCTGTCAATCAGGAAGTGGTTGACACGGAGACAAGCATATTTGTTAGATGCCCAACAGGGGATTCCTGTATCCGAATATGGGGTTCTAATTGAAATGATCCGAGTGCCAGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATGTTACTCCATATCATCCTGGAATTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGTTTAAAAGCTGTTCCTACTGATTGCAGTGAATGTCTCGTTTGCTTAGAAGAGTTCCATGAAGGGAATGAGGTCCGTGGCCTGCCGTGTGCTCACAATTTTCATGTAGAATGCATTGACGAGTGGCTTCGACTGAATGTGAAATGCCCTCGGTGCCGCTGCTCAGTATTTCCAAATCTTGATCTCAGTGCTCTGTCCAATATCCATTCTGAGCCTCAAGTCTGA 894 0.4497 MAVRGVYFKWYDGFFLSMLAISVAIVAINWKRYHSCAHPLHIWIVVHYTTVFVFRVLMFVDNGLASGMGLDFGWQQRYARFCGRVVVLSILSMLFYPFLWAWTITGTLWFNNSKTCLPGLGQKWGFLIWLLFSYCGLLCIASLSIRKWLTRRQAYLLDAQQGIPVSEYGVLIEMIRVPDWAFEAAGQETRGMGQDVTPYHPGIYLTPAQREAVEALIQELPKFSLKAVPTDCSECLVCLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNIHSEPQV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5650 297 Pfam Ring finger domain 234 276 IPR001841 -
Lja1g5650 297 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Lja1g5650 297 SMART ring_2 235 275 IPR001841 -
Lja1g5650 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Lja1g5650 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 294 - -
Lja1g5650 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 294 IPR044793 GO:0004842|GO:0010182
Lja1g5650 297 SUPERFAMILY RING/U-box 216 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5650 Lja-Chr1 99258404 99264666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5650 58 293 C3H Transcription Factor Family AT3G47990 80.508 2.68e-139 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5650 K16284 - gmx:100812016 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5650 1 99258404 99264666 Lja1g5650 1 99258404 99264666 ECH
Lja4g2263 4 24895555 24899867 Lja1g5650 1 99258404 99264666 PCT