Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5644 ATGCACCCAGACCTCCACCGTTTCGGCGTCTCATCCCATTTCCGAAGCCACTTCCCCGCCTCATTCTCCCTCCGTAAGAAGGTTCCATGGTGGTACCAAATCCTCGACCCTCGGTCCAAATTCGTCGCACAATGGAACCGCACGTTCCTCTACTCTTGCATCGCCGCTTTGTTCCTCGACCCTCTCTATTTCTATTTCCCTATCACCGGCGATAAGGCTTGCATGCAAACCGATTTGGTCCTCGGCGTCTTCGTCACGTTCTCTCGCACCGTCGCTGATTTGTTCTTCTTTTTTCACATTGTTCTCAAGTTTCGCACCGCATTCGTTTCCCCTAAAGATCGTGTTTATGGCCACAAGGAACTTGTTACTGATCCCTACCAAATTGCGTCGCGCTACTTCAAGTCTGATTTCGTCGTTGATTTCCTCGCCACACTTCCTCTTCCACAGATAGTGGTTTGGTTTGTGATTCCGGCAATTAAAGATTCAACGGTGGCTCATGTAAACCACACCTTGTCTCTGATTGTACTCATTCAGTACATTCCTCGGCTGTTTCAAATTTTTCCCCTGCAACGGCGAATCTTGAAGACTAGCGGGCTTATAGCCAAAACTGCCTTGGCAGGGGCGTTGTACAATCTTGGTTTCTATATGTTGGCCAGTCATATTTTAGGAGCTTCCTGGTATGTTGCTTCCATTCAGCGCCAATTTGAGTGCTGGAGAATAACTTGCAGGAAGGAGATGAATAGAACACACTCTCCATCTTGTAATCCTTTGTTTCTAGATTGTGCTAGCATGACCAACCCTGAGCGCCAAGCTTGGTTTAGACACACTAAAGTCCTTACTGATTGTGATGCCCTCAATAATAAAAACCACTTTCAGTTTGGAATGTTTGCTGATGCTTTTACAGATCATGTCTCTTCCTCAAGATTCTTCCAGAAATATTTTTATTGTCTCTGGTGGGGTTTGAAAAATCTAAGTTCATATGGACAAAATATTCAAACAAGTACTTACAGTGCTGAAACGTTATTTTCAAGTTTCATATGCATTGCGGGCCTTATCCTATTTGCGCATCTCATTGGTAACATGCAGAATTATCTACAATCTTCAACAGCAAGACTTGAGGAGTGGAGGCTTAGACAAAAGGATACAGAAGAGTGGATGAATCATCGGCAACTTCCACAAGAACTGCAAGAACGTGTTCGCAGGTTTGTTCAATATAAATGGCTAGCCACTAGAGGTGTGGATGAAGAAGCTATTTTACGCTCTTTGCCCGTAGACCTTCGGCGCGAGATTCAGAGGCATCTTTGTCTTGATATTGTCCGACGAGTTCCTTTTTTTGGCCAAATGGATGATCAGCTTCTAGATGCTATATGCGAACGTCTTGTTTCATCCCTTAACACAAAAGACTCACACATTGTTCGAGAAGGTGATCCAGTAAGAGAAATGCTTTTCATCATTAGAGGACAAGTAGAGAGCTCCACAACTGACGGTGGTAGATCAGGATTCTTCAACTCCATCACCCTCAAACCCGGTGACTTCTGTGGTGAAGAATTGCTAACGTGGGCTCTTGTGCCAGCCTCGAGTCTTAACCTTCCATCTTCGACTCGAACGGTGAAGACTCTCACTGAAGTTGAAGCATTTGCACTCAGAGCAGAGGACCTCAAATATAGACTCCAACATGCTTTCCGGTACTATTCCCACCAGTGGAGAGCTTGGGGGTCTTGCTTTATACAAGCTGCTTGGAGGCGTCATCGCAAGAGACAATTGACAATGGAGTTGATGGAGAAAGAAAACTTGTATTATTCAAATGTGATGGAGCTAGAAGATGATGAAGAAAATGGTGCAGAAGAAGGTTTAGTTGGGGACAATGCAAGCCATGGTCAAAATCTTGGGGCTACAGTTTTGGCTTCAAAATTTGCTAAGAAAACTAAAGGGGCGGTTAAGAGAATACCCATCCCTGAGAGTAGCAGTTTAAAGATGCCCAAGATGTTCAAGCCAACAGAGCCTGATTTCTCAAGATTCCATGATGATTAG 2031 0.4456 MHPDLHRFGVSSHFRSHFPASFSLRKKVPWWYQILDPRSKFVAQWNRTFLYSCIAALFLDPLYFYFPITGDKACMQTDLVLGVFVTFSRTVADLFFFFHIVLKFRTAFVSPKDRVYGHKELVTDPYQIASRYFKSDFVVDFLATLPLPQIVVWFVIPAIKDSTVAHVNHTLSLIVLIQYIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGFYMLASHILGASWYVASIQRQFECWRITCRKEMNRTHSPSCNPLFLDCASMTNPERQAWFRHTKVLTDCDALNNKNHFQFGMFADAFTDHVSSSRFFQKYFYCLWWGLKNLSSYGQNIQTSTYSAETLFSSFICIAGLILFAHLIGNMQNYLQSSTARLEEWRLRQKDTEEWMNHRQLPQELQERVRRFVQYKWLATRGVDEEAILRSLPVDLRREIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSHIVREGDPVREMLFIIRGQVESSTTDGGRSGFFNSITLKPGDFCGEELLTWALVPASSLNLPSSTRTVKTLTEVEAFALRAEDLKYRLQHAFRYYSHQWRAWGSCFIQAAWRRHRKRQLTMELMEKENLYYSNVMELEDDEENGAEEGLVGDNASHGQNLGATVLASKFAKKTKGAVKRIPIPESSSLKMPKMFKPTEPDFSRFHDD* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5644 676 MobiDBLite consensus disorder prediction 649 676 - -
Lja1g5644 676 Pfam Ion transport protein 45 371 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja1g5644 676 Pfam Cyclic nucleotide-binding domain 467 554 IPR000595 -
Lja1g5644 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 11 672 - -
Lja1g5644 676 Gene3D - 72 368 - -
Lja1g5644 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 11 672 - -
Lja1g5644 676 ProSiteProfiles cAMP/cGMP binding motif profile. 444 518 IPR000595 -
Lja1g5644 676 Gene3D Jelly Rolls 442 560 IPR014710 -
Lja1g5644 676 SUPERFAMILY Voltage-gated potassium channels 36 366 - -
Lja1g5644 676 SUPERFAMILY cAMP-binding domain-like 373 560 IPR018490 -
Lja1g5644 676 CDD CAP_ED 444 559 IPR000595 -
Lja1g5644 676 SMART cnmp_10 444 575 IPR000595 -
Lja1g5644 676 Gene3D Helix hairpin bin 370 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5644 Lja-Chr1 99080990 99085133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5644 4 670 Ion Channels AT3G48010 62.942 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5644 K05391 - gmx:100783672 1180.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5644 1 99080990 99085133 Lja1g5644 1 99080990 99085133 ECH