Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5643 ATGGGCTTCTCTTTGTCTTCAACAGCAGCAAGTACTTGCATTTTGTTCTTGTTTCTACTCTCTTGCACTTGCTTCACTTCAACAGATGCTTATGATCCGCTTGATCCTAATGGGAATATCACAATCAAATGGGATATTACAACCTGGACATCAGATGGTTATGTTGCGGTTGTTACAATGAACAACTTCCAACAATATCGTCATATCACTGCACCTGGCTGGTCATTAGGATGGACATGGGCCAAAAAGGAGGTAATATGGAGCATGGTGGGGGGGCAGACCACTGAACAAGGGGATTGTTCAAAATTTAAGGGATCGATTCCACATTGCTGTAAAAAGGACCCCACAGTAGTAGATTTACTTCCCGGAACACCTTACAATATGCAATTCTCAAATTGCTGCAAAGGTGGGGTGCTTAGTTCATGGGCACAAGATCCAACCAATGCAGTAGCATCATTTCAAGTCAGTGTTGGTAGAGCTGGAACAACAAATAAAACTGTCAAAGTCCCCAAAAACTTCACTTTGAAAGCACCAGGACCAGGTTATACATGTGGGCCAGCAAAAATTGTGACACCCACTAAATTCATTCAACCAGATAAAAGGAGGGTGACTCAAGCACTCATGACATGGAATGTGACATGCACGTATTCACAATTTCTAGCTCAGAAAACTCCCACTTGCTGTGTCTCCCTCTCATCTTTTTATAATGATACCATCGTACCCTGCCCAACATGTGCTTGTGGTTGCCAGAGTAACTCATCTCGATCAGGGAGCTGTATAGAGGCAGATACACCACATTTAGCATCGGTTGTTGCCGGTTCTGGAAAGAATACACCTTTGGTTCAATGCACTAGGCATATGTGCCCCGTCCGAATACATTGGCATGTTAAGGTTAACTACAAAGAGTACTGGCGTGTGAAGGTCACTATTACTAATTTTAATTACAAAATGAACTATTCTGAGTGGAACTTGGTTGCTCAACACCCGAACTTCGACAATCTAACTCAGTTATTCAGTTTCAACTACAAGTCATTAACTCCTTATGGTTCAATAAATGATACAGCATTGCTTTGGGGAGTGAAGTTCTATAATGATTTTCTCAATGAAGCTGGCCCTAGTGGTAATGTTCAGTCAGAGATACTCTTCCGAAAGGACAAATCAACTTTTACTTTTGAGAAGGGCTGGGCTTTTCCTCGGAGGATCTACTTCAATGGTGACAACTGTGTTATGCCCTCGCCCGATGCTTATCCATGGTTACCTAATGCTGGTTCTCGGCAAGAGGTTTCCTTGTTTGCTTTAGTGATGGCCTCTTTGGTAGCTGTGGTATTATGTTTCGCACAGGCATAA 1347 0.4261 MGFSLSSTAASTCILFLFLLSCTCFTSTDAYDPLDPNGNITIKWDITTWTSDGYVAVVTMNNFQQYRHITAPGWSLGWTWAKKEVIWSMVGGQTTEQGDCSKFKGSIPHCCKKDPTVVDLLPGTPYNMQFSNCCKGGVLSSWAQDPTNAVASFQVSVGRAGTTNKTVKVPKNFTLKAPGPGYTCGPAKIVTPTKFIQPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQSNSSRSGSCIEADTPHLASVVAGSGKNTPLVQCTRHMCPVRIHWHVKVNYKEYWRVKVTITNFNYKMNYSEWNLVAQHPNFDNLTQLFSFNYKSLTPYGSINDTALLWGVKFYNDFLNEAGPSGNVQSEILFRKDKSTFTFEKGWAFPRRIYFNGDNCVMPSPDAYPWLPNAGSRQEVSLFALVMASLVAVVLCFAQA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5643 448 PIRSF COBRA 3 448 IPR006918 GO:0010215|GO:0031225
Lja1g5643 448 PANTHER COBRA-LIKE PROTEIN 9 444 - -
Lja1g5643 448 Pfam COBRA-like protein 54 217 IPR006918 GO:0010215|GO:0031225
Lja1g5643 448 PANTHER PROTEIN COBRA 9 444 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5643 Lja-Chr1 99072338 99075575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5643 1 443 COBRA Gene Family AT3G02210 73.942 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5643 - - gmx:100783820 849.351