Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5642 ATGGTGGCAAGATCATGCGTGAATTTGGTGGACTTGGTCACAGGGGATTTTTTAAATTTCCCTCAAACTGCCAGAGCTCTTCCGCGAGTTATGACTGTTCCTGGAATCATGTCTGATGTAGATGGTAAACAGAGTAACGATGATGATTTAAATTCCTTCGCATCAGAACAACGTCACAGGATGATTATTGTATCAAATTTTCTTCCTCTCAATGCTGAAAAGGATGAGACCTCTGGCAGATGGTGCTTTACTTATGATGAAGATTCAATTTTTTGGCAGCTAAAGGATGGCCTCTGTGCTGATACAGATGTTGTTTATGTGGGATCTTTGAAAGTTAATGTTCATGAGAGTGAGCAAGAGGAAGTTTCTCTTCAGTTGCTTAAGGAATTCAGTTGTGTGCCTACTTTTATTCCTTCTGACATCCAGAAACAGTTTTATGATGGATTCTGCAAGCAATACTTGTGGCCTCTACTTCATAGCATGTTGCCCATGTATCCAGGTTCTTGCGAACTCTTTGATAGGTCACTGTGGCAGGCTTATGTTTCTGCTAATAGGATATTTGCTGATAAAGTCATGGAGGTCATTAATCCCGAAGTTGATTATGTTTGGATACATGATTATCATCTCATGGTTCTTCCGACAATTCTCCGGAGGCGGCACAGTCGTGTCAAGCTAGGCTTTTTCCTCCATAGTCCATTTCCTTCATCTGAGATTTATCGATCCCTGCCTGTGAGAAGTGAAATTCTGAAAGCACTGCTCAATACAGATTTAATTGGTTTTCACACATTCGATTATGCTCGCCACTTTCTGTCCTGCTGCAGACGAATCCTTGACTTGGAATATGAAAACAAAAAGGGTTACCTTGGAATTGAATACTTCGGCCGTACAGTATTCATTAAAATATTGCCTGCTGGGATTCATATGGGTCGCATTGAATCGGCCCTAAGTCACCCTTCCTGTTCTATGAAAGTTTTAGAAATCTGCAGAGAATTGGAGGGGAGAAAACTTATTATCGGTGTTGATGATATGGATGTATTTAAAGGTGTAAGTTTAAAGTTCTTGGCCATAGAAAAACTTCTGAAGGAATATCCAGAACTGCGGGGTGAAATAGTACTAGTCCAAATTCTAAATCCCCCAAATAGTGCCAGTAAAGATGCTGAGGAAGTAATGGAGGAGGCCAACATTACTGCGGAAATGATAAATGAGAAGTATGGTTTTCCAGGTTACGCTCCTATCGTTATCATTGATCATCATGTTCCTTTTTATGAGAAGGCATCCTATTATACTTTGGCAGAATGTTGCATTGTGAACGCTGTACGGGATGGTATGAATTTGATTCCATACCAATACATTGTCTGCAGGCAGGGGAGTGCGAAAACGGATGAAGCCTTGGAAATATCTTATGACTCCCCTCGAAGAAGCGCGCTTGTTGTTTCTGAGTTCATAGGTTGCTCCCCATCTCTTAGTGGGGCAATCAGGGTAAATCCGTGGGATATCAATGATGTAGCTGAAGCACTAAGATCAGCTATTATGATGTACGATAAAGAGAAGAAATTCCGGCATGAGAAGCACTATAAGTATGTTAGTTCTCATGATGTGGCTTACTGGGCCCGGCATTTCGAGCAAGATCTAGTTTTCTCTTGCAAGGATCACTACGCGAAATGTTTCTGGGGCCTTGGCTTTGGCCTGAATTTCAGAGTTTTGGCCCTCTCTCCGAGTTTTAGGAAGCTGTGCACACATCAAATTGGCTCTGCATATAAAAGGGCAGATTGCAGGGCAATCTTTTTGGATTATGATGGTACTATTGTACCTCAAGCTTCCATTGTAAAAGCTCCAAGTCCTGAAGTTGTATCTGTGCTAAATAATCTCTGCAGTGACCCTAACAATACTGTGTTTATTGTTAGCGGCCGGGGGAAAACATCACTGGGTGAATGGCTTGATCAGTGTGAGAACCTTGGTATAGCGGCTGAGCACGGTTATTTTACAAGGTGGGGTAAAGAATCAAGCTGGGAAATGAGTCATGCAGACACAGATTTTACATGGAAAAGGATTGCTGAACCCGTTATGAGATCATATACTGAGGCGACAGACGGCTCCTACATAGAGACCAAAGAGAGTGCATTGGTATGGCATTACTATGACGCTGCTCCTGATTTCGGATCATGGCAAGCCAGGGAGCTCTTGGATCACCTTGAAAATGTGCTCGCAAATGAACCTGTAGTAGTAAAAAAGGGTCAGCATATTGTTGAAGTCAAGCCTCAGGGGATTACTAAAGGGTTAGTTGTACAGCAAGTTCTGTCTAGACTAACAACCATGAAAGGAAAATCGCCGGATTTTATACTTTGCATCGGAGATGATAGATCTGATGAGGACATGTTCGAGAGCATATTGACCAAATCTGACAGTGCAACTTCATCCTCAGCACCAGAAATCTTTGCCTGCACTGTTGGCCAAAAACCAAGCAAAGCAAGATACTACCTAGATGATACCATGGACGTGATGGCGCTACTTACCGCTTTGGGGTCTGAATCAAGATCTTCTACAGAAGCCCCTTCTGAAAAAGCAAACTTCTGCGTTGAGAGAACTGTTTAA 2592 0.4232 MVARSCVNLVDLVTGDFLNFPQTARALPRVMTVPGIMSDVDGKQSNDDDLNSFASEQRHRMIIVSNFLPLNAEKDETSGRWCFTYDEDSIFWQLKDGLCADTDVVYVGSLKVNVHESEQEEVSLQLLKEFSCVPTFIPSDIQKQFYDGFCKQYLWPLLHSMLPMYPGSCELFDRSLWQAYVSANRIFADKVMEVINPEVDYVWIHDYHLMVLPTILRRRHSRVKLGFFLHSPFPSSEIYRSLPVRSEILKALLNTDLIGFHTFDYARHFLSCCRRILDLEYENKKGYLGIEYFGRTVFIKILPAGIHMGRIESALSHPSCSMKVLEICRELEGRKLIIGVDDMDVFKGVSLKFLAIEKLLKEYPELRGEIVLVQILNPPNSASKDAEEVMEEANITAEMINEKYGFPGYAPIVIIDHHVPFYEKASYYTLAECCIVNAVRDGMNLIPYQYIVCRQGSAKTDEALEISYDSPRRSALVVSEFIGCSPSLSGAIRVNPWDINDVAEALRSAIMMYDKEKKFRHEKHYKYVSSHDVAYWARHFEQDLVFSCKDHYAKCFWGLGFGLNFRVLALSPSFRKLCTHQIGSAYKRADCRAIFLDYDGTIVPQASIVKAPSPEVVSVLNNLCSDPNNTVFIVSGRGKTSLGEWLDQCENLGIAAEHGYFTRWGKESSWEMSHADTDFTWKRIAEPVMRSYTEATDGSYIETKESALVWHYYDAAPDFGSWQARELLDHLENVLANEPVVVKKGQHIVEVKPQGITKGLVVQQVLSRLTTMKGKSPDFILCIGDDRSDEDMFESILTKSDSATSSSAPEIFACTVGQKPSKARYYLDDTMDVMALLTALGSESRSSTEAPSEKANFCVERTV* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5642 863 Coils Coil 383 403 - -
Lja1g5642 863 TIGRFAM T6PP: trehalose-phosphatase 592 840 IPR003337 GO:0003824|GO:0005992
Lja1g5642 863 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 593 795 IPR006379 -
Lja1g5642 863 CDD HAD_TPP 593 835 - -
Lja1g5642 863 Pfam Trehalose-phosphatase 595 830 IPR003337 GO:0003824|GO:0005992
Lja1g5642 863 CDD GT20_TPS 60 544 IPR001830 GO:0003824|GO:0005992
Lja1g5642 863 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 544 - -
Lja1g5642 863 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 849 IPR001830 GO:0003824|GO:0005992
Lja1g5642 863 SUPERFAMILY HAD-like 592 840 IPR036412 -
Lja1g5642 863 Gene3D Glycogen Phosphorylase B; 51 312 - -
Lja1g5642 863 Pfam Glycosyltransferase family 20 60 544 IPR001830 GO:0003824|GO:0005992
Lja1g5642 863 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 849 - -
Lja1g5642 863 Gene3D - 594 827 IPR023214 -
Lja1g5642 863 Gene3D - 674 754 - -
Lja1g5642 863 Gene3D Glycogen Phosphorylase B; 313 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5642 Lja-Chr1 99021789 99025011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5642 1 847 Trehalose Biosynthesis Gene Families AT1G23870 62.810 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5642 K16055 - gmx:100812031 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5642 1 99021789 99025011 Lja1g5642 1 99021789 99025011 ECH