Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5638 ATGAGCCTAAAACCATTCTGGGCACTCTTGATTCCCATTTTTATGTCTTTTCTGATGGCTAATTCTGAGGAACAAGTGGTGGTGAAGGCCTTGGTGAAATTCATGGAAAAACTTGCACCAGAGAATGGATCAAAAAATGCCATGTGGGGTTGGAACCTCACTTCTGATCCATGCACTGATCACTGGCATGGTGTGATCTGCTACTCAAACAACCAATATGTGAAGAACATTATTCTTGAGAATCTCAAATTCAGCGGGGTTGTTGATGCGAATTCTCTTTGCGTAGCGAAAAGTATCCAAATACTTAGCCTGAGGAACAACAATTTGCAGGGTTTGATATCTGAGGATATAGGAAATTGCAAGCTCTTGACTCACTTGCTCTTAAGTGGGAACCGATTCTCCGGCGATCTTCCTCTTTCTGTTGCTGAATTGAAGAACTTGAAGCGGCTTCATGTTAATGACAACTACTTCACTGGACAGCTTCCTAACATGGCTCGCATTTCGAGCTTGATATCATTTCTTGCTCAAAACAACAACTTCTCTGGTGAAATTCCTGATTTTCAGTTCTCGAATCTCGATGCATTCAATGTCTCCAACAACAAGTTAACTGGTCAAGTTCCTGATGTCAGAGGAAGATTTCATGCAGAAAGCTTTTCTGGTAATGCTAACTTGTGTGGAAAGCCACTTTCAAAGGCATGTCCAAATCCTCCACAATCACATGTGAAGAAAGACAAGAAATCATTCAGTGAGGATCTTCCAATTTATTCAGGTTACATAATTCTAAGCTTCATTCTCCTGCTTTTCTTAGTCTATAAATGTATGAGGAAATGCCAGACAAAAGAAAAAGCATTGGTTGCTGAAAAGAAGGACATGGCAGAAGATACTAGTGGTGATAACAACAAGGCTAGTGAAACTTCAATTTCCATTAATGGATCTAAGAATTGGCTGAATGGGTTTAAATCCGAGTGTTCGTTGACATCATTGGAAAGTGGGATGACTACATCTGGTCTTGTTCTTTTTTCGAGTCGGAGGCTGAGAGGGATGCAATTTGAGGACTTGCTTAGTGCTCCTGCTGAGTTGATTAGGAGAGGAAAACATGGAAGCCTCTACAAGGTTATGCTTGACAATGGGATGGTGTTGGCAGTGAAGAGGATCAAGGATTGGGGAATTTCGAAGCAGGATTTTCAGAGAAGGATGAACATGATAGCAGATGTGAAGCATCCACTTGTCATGCCACCTGTCGCATACTATTGCTCTCAGCAAGAGAAGCTTCTGGCATATGAGTTTCTGCAGAATGGTAGCCTCTTCATGTTACTCTATGGATCTCAAAGTGGGAACTCTCTTGACTGGGGAAGCAGACTAAATGTTGCTGCAAAGGTATCTAAGGCTTTGGCATATATGCATGAGGAGCTCAGTGAGAGTGGAATAGCACATGGTAACTTAAAATCAAGTAACATTTTGTTTGACAAGAATATGGATCCGCGAATAAGCGAATATGGCCTAATGGTAGCTGAAGATGACTCCATTTCTCGTAAGAAAAGTCGGGATAACAGAAACCCGATTGCAGCCACCTTCAAAGCTGATGTATATGCCTTTGGTGTGATGCTTCTGGAGCTGCTTACAGGGAAAGTAGTTAAGAATGATGGATTCGATCTGGTTCAATGGGTGGATTCAGTGGTCAGAGAGGAATGGACTGTGGAAGTTTTTGACAAGTTCCTAATCTCACAAAGTATTTCTGAAGAGAGGATGATGAACTTGTTGCAGATAGCATTAAAATGCATAAGTGCTTCTCCAAATGATAGGCCAAGTATGAGTCAAGTTGCAGTGATGACAAATGCATTGAAAGAGGAAGATGAAAAATCCATATCATTTGACACATGA 1881 0.4125 MSLKPFWALLIPIFMSFLMANSEEQVVVKALVKFMEKLAPENGSKNAMWGWNLTSDPCTDHWHGVICYSNNQYVKNIILENLKFSGVVDANSLCVAKSIQILSLRNNNLQGLISEDIGNCKLLTHLLLSGNRFSGDLPLSVAELKNLKRLHVNDNYFTGQLPNMARISSLISFLAQNNNFSGEIPDFQFSNLDAFNVSNNKLTGQVPDVRGRFHAESFSGNANLCGKPLSKACPNPPQSHVKKDKKSFSEDLPIYSGYIILSFILLLFLVYKCMRKCQTKEKALVAEKKDMAEDTSGDNNKASETSISINGSKNWLNGFKSECSLTSLESGMTTSGLVLFSSRRLRGMQFEDLLSAPAELIRRGKHGSLYKVMLDNGMVLAVKRIKDWGISKQDFQRRMNMIADVKHPLVMPPVAYYCSQQEKLLAYEFLQNGSLFMLLYGSQSGNSLDWGSRLNVAAKVSKALAYMHEELSESGIAHGNLKSSNILFDKNMDPRISEYGLMVAEDDSISRKKSRDNRNPIAATFKADVYAFGVMLLELLTGKVVKNDGFDLVQWVDSVVREEWTVEVFDKFLISQSISEERMMNLLQIALKCISASPNDRPSMSQVAVMTNALKEEDEKSISFDT* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5638 626 Gene3D Transferase(Phosphotransferase) domain 1 430 625 - -
Lja1g5638 626 SUPERFAMILY Protein kinase-like (PK-like) 359 610 IPR011009 -
Lja1g5638 626 ProSiteProfiles Protein kinase domain profile. 355 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5638 626 PANTHER OS05G0588300 PROTEIN 3 625 - -
Lja1g5638 626 Gene3D Phosphorylase Kinase; domain 1 320 429 - -
Lja1g5638 626 Gene3D Ribonuclease Inhibitor 189 235 IPR032675 -
Lja1g5638 626 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Lja1g5638 626 PANTHER LRR RECEPTOR-LIKE KINASE 3 625 - -
Lja1g5638 626 Pfam Protein kinase domain 361 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5638 626 SUPERFAMILY L domain-like 53 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5638 Lja-Chr1 98981940 98984482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5638 43 607 Receptor kinase-like Gene Family AT1G48480 34.380 1.37e-95 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g5638 Pkinase 6.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5638 - - gmx:100787974 876.7