Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5635 ATGTGGAAAGCCTCCACACGCGGCGACTCAATTGTAAACACCGGTGGTTCTTCTTCTTCTTCGGCGGCGTCGGCGTCAACTAAAGCGTTCTACAAGGACGGTCGCAAAATTAGTATTGGTGAATGTGCTCTCTTCAAATCATCTCAAGGTTGTCCACCTTTTATTGGAATTATTCATTGCCTGGCACTCGGCAAAGCAAATAAATTGAAACTAGGTGTTAATTGGCTTTATCGACCCATTGAAGTAGAGCTTAGCAAGGGTGTTCCATTGGAGGCGGCTCCAAACAAAATTTTCTACTCCTTTCATAGGGATGAGATAAATGCTGAATTGCTGCTTCATCCTTGTAAAGTTGCATTTCTTCCAAAAGGTGCTGAACTTCCATCGGGGATTTCATCATTTGTGTGTAGGAGGGTTTATGACGTTGCGAACAAGTGTTTATGGTGGTTAAATGATCAAGGTCATATTAATGATTGCCAAGAAGTACATGAGCTATTAAACAGGACTTGTGTAGAAATGCATGCAACAGTGCAGTCGGATGGTCGATCTCCTAAGCCAATGAGTAGTCCAACATCAACATCACAGTTAAAATCTGTTTCAGATGGTGTCCAGAACAGTGCTTCCTTTTCTTCTCATGTTAAGGGGAGGAAAAGGGAGAGGGTAGATCAAGGCTCCGAGCCTGTCAAGCGAGAACGTTCAGGAAAAGTTGAGGATGGAGATTCTGGTAATTTTAGGCCTGATAATATTTTGAAGACCGAGATATCCAAAATTACAGAAAATGGAGGGCTTGTTGATAGTGAAGGAGTTGAAAAGTTAGTGCAGCTGATGGTTCCTGATAAAATTGAGAAGCAGATAGATTTAGCTTGCCGGTCACTGCTTGCAGCTGTTATTGCAGCAACAGATAAAGTTAATTGTCTTAGTCAGTTTGTGCAGCTGAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGTGATGGTATTGGGTCTAGAGAAGGTGATAAATCTGTTGAGGAGTTTCTCTTGGTATTACTTCGAGCACTTTATAAGCTTCCAGTGAATCTTCAGGCTCTGAAGATGTGCAACATCGGTAAATCTGTGAATCATTTGCGAACTCATAAAAACACTGAAATTCAGAAGAAAGCAAGAGGTTTAGTTGACACATGGAAGAAACGCGTTGAAGCTGAAATGAAAAGTAATGATGCGAAGTATCGTCCCACTGTCTCCTGGCCTGCCAAACCACGTCTTCCTGATGTTGGTCAAGGTGGGAATAGAAATTCAGGTGCATCATCTGATGTTGCCATGAAGAGTTCAGTTACACAGCATTCTGTGTCGAAAACTGCCTCTGTGAAGATTGCCTTGGGAGAGAATACTACTAGAACTGCATCAACATCTGCATTTCCAGATCTTGCAAAATCAGTACTCTCGCCTGCATCTGCAACTACGAATTTAAAAGATGGACAGCCCCGTGTTGGTTCTATGAGTGGTGGTTCTGATCATCCTATGACAAATGCAAGGGATGAGAAAAGTAGTAGTTCTAGTCCATCTCACAACAGTCAATCTTGTTCTGGTGACCATGCTAAAACTGCGGGTCTTTCAGGAAAGGAAGATGCCAGAAGCTCTACTGCAATGAGTGCAAATAAGTTATCAGGTGGCTCTTCACGGCATCGGAAGTCTACTAATGGACTCTCAGGTTCAGCTCCATCTGGAGGGAAAAGGGAAACTGGATCATGTAGGAATTCCTCCTTGCACAAAAGTTCTACATCAGAGAAAATATCTCAATCTCGATTAATGGAAAAAACACTTGATGAAACCTCTATTGAGGGGAATACTCCCAAGCTCATTGTTAAAATTTCAAACCATGGTAGAGGTCCTGCACAAAGGGCCAATGTCGGTTCTTTTGAGGATCCTGCAATCATGAATAGTCGAGCCTCTTCTCCTGTCCTTTCTGAGAAGCAAGATCAGTTTGATCACAGCTCGAAGGAAAAGAATGACTTTCATCAAGCCAATATTGGCTCAGATATTCATACTGAATCTTGGCAGAGTAATGACTTCAAAGATGTATTGACTGGCTCTGACGAGGGTGATGGGTCGCCTACTGCAGTTACTGATGTAGAGCGCTGTAGGACTGGTGATGATTGTAAGAAAACATTAGAAGTATCAAAAACTGCTTCATCATCGTCTGGAAATGAAAACAAAGATAGGAATTTGCAGGATGCTTCTTACAGCTCCATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAAGCTGATGATATTGGTATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATCTCGAAATCTGAGTTGTTAACGGCAGCTGGATCTCCAGAAAGAAACACTGCTACTGCTGAACTGTCATGCACAGCCAATGGTGTAGTCAAGTCCTCTGAAGAAAATCTTGTCCAGGATGAATGCCAATCCAATACTGGTCTCGGTACTGAGCAACGGAATCAGGGTTCTATATCAGGTGATTCAAGGATGTATGATGGTAATGCTGATTTTCGTGCATCTGAAGGGAAAGCTTCAAGAGGGCTGCTTAATGCATGTAGTATGGATTGTCAACAGGTTACTGAATCTAATTTAGAAATCAAAGGAAAATTATATGAAAATCCTATTTCTACTAAATTGGGTGGTCTTCCTGAAAGCACTGTGCAAGAAGCTAGAGATGGTGACAGTAGCGAGAAGATGCAGGAGGATTCTGTCCAGGGAGAAATTACTAGTGAAGTTCTTGGTATTAAGGTCAGTGGTGGTGTTGGAGTTAAGGTGGAAACAATTGAAAAATTGTCATGTCCCTCTGTGGATGTAAATAGCAATAAATGTACTGCTGAGGGATCAAGTGGTGGCGAACAGACAGCTCAGAAGCCTCCTGCTATTCTTGAGCAATCTGATTCAGCAAGAGGAACAAAAGAGAATGCAATTCATTCTTGTGGTGTTGATAAGGTTCCTGATGACCACAATGTACAGGAATATGAAAAAACTGATGATATGGCTTCTGAGAACCATGCTAGTCAGTCCAAAAAGCAAAGAGTTGGGGGTGAAAGTGATACTTTGATGAAGTCTGAGAATAGAGGTTTATGTACTAGTCCGCCTGGTTTTGATGCTGAACATGTGGAGCAGAATTCAGAAATAAAACAGGTTCATGACCAAGATGTGGGACAGATGCTTCACAAAGCTTCACCTAGCTTTTGCTCGCAAGAAATGGATAAGCATCTGGATTCTAAAGGATCAAAACTGACTGCCATGGAGGCAGAAGAGGCTGAGGAGTGCACCTCTACCACTGCAGATGCTTCTTCCATGTCTGTTGCTGCTTTGTCAGATGCAGATGCAAAGGTTGAGTTTGATTTAAACGAAGGATTAAATGCTGATGATGGAAACTGTGGTGAGTTCAACAGCATCACCTCTTCTGGTTGTGCACCTTCTGTTCGATTGATCAGTCCTGTGCCTTTTCCTGCTTCATCTGTGTCTTGTGGTATTCCTGCCTCAGTCACTGTGACTGCTGCTGCAAAGGGGCCTTTCCTGCCACCTGAAGATTTATTGAGAAGTAAAGGGGAACTTGGTTGGAAGGGATCAGCTGCCACTAGTGCGTTCCGACCAGCCGAGCCCAGGAAAGTAACGGAAATGCCTCTTGGTGCACTAACCACTGCAATATCTGATGTGGCAGATGGAAGGCAGAGACGACCACCGTTGGACATTGATTTGAATGTGCCTGATGAAAGAACACCTGATGATGTTTCTTCTCAAAACTGTGCTCATCATACAGATGCTGTTTCTCTTGCAGCCAATGGCCCTGATCCAGTGTGCAATAAAATGGTATCAACTGTTCGCTACACTGGAGGGATGGATCTTGACTTGAACCAAGTGGATGAAGCTTCTGATGTGGGCTATTGCTCCACGAGCAGTGGTCATAAAATAGATATGCGTGCATCACTTATGCCGGTGAAACCATCATTGGTGGGTCCTCCAAACCGAGAAATGAGTGTCCACAGGGACTTTGATTTGAACAATGGACCTTCACTTGATGAAGTCACCGCTGAACCATCATTGTTATCTCAGCTTGCCCGGAGCAGTTTTCCATCTCAACCACCTGTTTCTGAACTTAGTGTGAGTACTGCAGAGCCAGGGAACTTTTCCTCATGGCTTCCTTCCAATGGCAACACCTACTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTCGCAATTGTTGCCCCCAATGGATCACACAGATTTTTGAATCCTGCCAGTGGTAGCAATCAATTTGGACCTGATGTTTATAGGGGTCCAGTGTTTTCATCTCCTGCAGTATCATATCCATCTGCTCCTTTTGAATATCCTGTCTTTCCTTTTAATTCCAGTTTCCCTCTTCCATCAGCATCAATTTCTGCTGGATCAACTGCTTATGTATATCCAACATCAAGCAATCGGCTTTGCTTCCCTGCAGTAAGTTCACAGTTAATGGGGCATGCAAGCACAGTTTCATCCCATTTCCCTAGGCCTTATGTTGTTGGCTTTCCAGATGGTAGCAATAGTAGTAGTGCTGAGACCAGTAGGAAATGGCCAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGAGGTTCAGACTTGGAAGGGAGAGATGAGATTTTGCCTCTTCCATCAAGGCAACTTCCTGTTGCCAGTTCACATGCCCTAGCTGAGGAGCATGCAAGGATCCAGCTGGCTGGTAGTGTTTGTAAGAGGAAGGAGTCTGATGGCGGGTGGGATGGCTACAAGCGATCCTCATGGCAATAG 4827 0.4371 MWKASTRGDSIVNTGGSSSSSAASASTKAFYKDGRKISIGECALFKSSQGCPPFIGIIHCLALGKANKLKLGVNWLYRPIEVELSKGVPLEAAPNKIFYSFHRDEINAELLLHPCKVAFLPKGAELPSGISSFVCRRVYDVANKCLWWLNDQGHINDCQEVHELLNRTCVEMHATVQSDGRSPKPMSSPTSTSQLKSVSDGVQNSASFSSHVKGRKRERVDQGSEPVKRERSGKVEDGDSGNFRPDNILKTEISKITENGGLVDSEGVEKLVQLMVPDKIEKQIDLACRSLLAAVIAATDKVNCLSQFVQLRGLPVFDEWLQEVHKGKIGDGIGSREGDKSVEEFLLVLLRALYKLPVNLQALKMCNIGKSVNHLRTHKNTEIQKKARGLVDTWKKRVEAEMKSNDAKYRPTVSWPAKPRLPDVGQGGNRNSGASSDVAMKSSVTQHSVSKTASVKIALGENTTRTASTSAFPDLAKSVLSPASATTNLKDGQPRVGSMSGGSDHPMTNARDEKSSSSSPSHNSQSCSGDHAKTAGLSGKEDARSSTAMSANKLSGGSSRHRKSTNGLSGSAPSGGKRETGSCRNSSLHKSSTSEKISQSRLMEKTLDETSIEGNTPKLIVKISNHGRGPAQRANVGSFEDPAIMNSRASSPVLSEKQDQFDHSSKEKNDFHQANIGSDIHTESWQSNDFKDVLTGSDEGDGSPTAVTDVERCRTGDDCKKTLEVSKTASSSSGNENKDRNLQDASYSSINALIEGVKYSEADDIGMNLLASVAAGEISKSELLTAAGSPERNTATAELSCTANGVVKSSEENLVQDECQSNTGLGTEQRNQGSISGDSRMYDGNADFRASEGKASRGLLNACSMDCQQVTESNLEIKGKLYENPISTKLGGLPESTVQEARDGDSSEKMQEDSVQGEITSEVLGIKVSGGVGVKVETIEKLSCPSVDVNSNKCTAEGSSGGEQTAQKPPAILEQSDSARGTKENAIHSCGVDKVPDDHNVQEYEKTDDMASENHASQSKKQRVGGESDTLMKSENRGLCTSPPGFDAEHVEQNSEIKQVHDQDVGQMLHKASPSFCSQEMDKHLDSKGSKLTAMEAEEAEECTSTTADASSMSVAALSDADAKVEFDLNEGLNADDGNCGEFNSITSSGCAPSVRLISPVPFPASSVSCGIPASVTVTAAAKGPFLPPEDLLRSKGELGWKGSAATSAFRPAEPRKVTEMPLGALTTAISDVADGRQRRPPLDIDLNVPDERTPDDVSSQNCAHHTDAVSLAANGPDPVCNKMVSTVRYTGGMDLDLNQVDEASDVGYCSTSSGHKIDMRASLMPVKPSLVGPPNREMSVHRDFDLNNGPSLDEVTAEPSLLSQLARSSFPSQPPVSELSVSTAEPGNFSSWLPSNGNTYSAVTISSIMPDRGDQPFAIVAPNGSHRFLNPASGSNQFGPDVYRGPVFSSPAVSYPSAPFEYPVFPFNSSFPLPSASISAGSTAYVYPTSSNRLCFPAVSSQLMGHASTVSSHFPRPYVVGFPDGSNSSSAETSRKWPRQGLDLNAGPGGSDLEGRDEILPLPSRQLPVASSHALAEEHARIQLAGSVCKRKESDGGWDGYKRSSWQ* 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5635 1608 Gene3D - 19 254 IPR043151 -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 211 243 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 819 839 - -
Lja1g5635 1608 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1608 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 888 914 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 403 450 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 819 845 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 176 210 - -
Lja1g5635 1608 Pfam TFIIS helical bundle-like domain 349 398 IPR017923 -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 950 983 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 990 1030 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 540 600 - -
Lja1g5635 1608 ProSiteProfiles BAH domain profile. 35 150 IPR001025 GO:0003682
Lja1g5635 1608 MobiDBLite consensus disorder prediction 1530 1559 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 7 22 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 1588 1608 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g5635 1608 SMART BAH_4 35 150 IPR001025 GO:0003682
Lja1g5635 1608 MobiDBLite consensus disorder prediction 176 246 - -
Lja1g5635 1608 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1608 - -
Lja1g5635 1608 ProSiteProfiles TFIIS N-terminal domain profile. 324 401 IPR017923 -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 428 450 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 483 601 - -
Lja1g5635 1608 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 268 402 IPR035441 -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 512 532 - -
Lja1g5635 1608 SMART TFS2_5 321 400 IPR003617 GO:0005634
Lja1g5635 1608 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 304 408 IPR035441 -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 649 669 - -
Lja1g5635 1608 MobiDBLite consensus disorder prediction 950 1041 - -
Lja1g5635 1608 CDD TFIIS_I 323 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5635 Lja-Chr1 98904743 98912536 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lja1g5635 Med26 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5635 - - ccaj:109810746 2320.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5635 1 98904743 98912536 Lja1g5635 1 98904743 98912536 ECH