Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5629 ATGGGTGGCAACGGTAAACACAGGTGGAAAATCTCCTTCCACCGTTCTTCCTCCCACTCTAAGCTTGAACCTCCTAAGGAATTTCTATGCCCCATTTCCGGGTCATTAATGTCCGACCCGGTTGTCGTCTCTTCGGGTCAAACATTCGAGCGTCTCTCCGTTCAAGTCTGCAACGACTTGAAGTTCTCACCCAATCTCAACGGAACCCGACCCGATTTCTCCACCGTCATCCCCAATTTAGCCATCAAAACCACCATCCTCAACTGGTGCCGCAAATCCGCCACCCCACCACCGTGCCCGCCCGATTACTCCGCCGTCGAGAGCCTGGTTCGTCAAGCAATGGCGGCGGAGCCGCAAGAGAGTGTTAGGGTTTCCGAGAAGGAGCTGCTGAAGGCGGTTGCTGATAACCCGGTGATGATAGGTTTCTCTCACGCCGCCACTGAACTGGGTCCGCCCCGGGTTAACGACTTCAACTCCGCGTCGTCGTCGGAGGAATCGGTTATCATCGCCGCGAGTCCCCCCGGAACGCCGTTGCCGCTCACCACTCGCCCTACTTGCTTCTCTTCGTCGTCGTCGTCCTCCTGCGAGATCGAAGCGCAAAACCCTAGCGGAGCTCCTCCTTCGGAGGAGGAGGCGAGATTGGTGAAGATGATGAAGAGCAACGAGGTTTTCGAGCAAGAAGAAGGCGTGGTTATGCTGAGGAGTGTCACCCGGAACAGGGAAGAGGCTCGGGTTTCGCTCTGCACGCCGCGTCTTCTCTCGGCGCTGCGGTTGTTGGTGGAGTCGCGATACGTCGTCGTTCAGGTCAACGCGGTGGCGTCGCTGGTCAACCTTTCTCTGGAGAAGACTAACAAGGTGAGGATTGTGCGGTCAGGGTTTGTTCCGTTTCTCATCGATGTTTTGAAAGGGGGATTCAGTGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTCAGCTTGGCGCTGGATGATGACAACAAGATGGCGATTGGGGTTCTCGGCGCGTTGCAGCCGCTAATGCACGCGCTGCGGTCGGAATCCGAGAGGACTAGGCATGACTCGGCGCTTGCGCTGTACCACTTGACTCTGGTACAGAGCAACCGGGTCAAGCTGGTGAAGCTCGGGGTTGTCCCGACGCTGCTTTCAATGGTGGCGAACGGGAATCTGGCGAGCCGGGTGCTGCTGGTTCTGTGCAATGTGGCTGCGTGCGTGGAGGGGCGGACCGCGATGCTGGATGGCAATGCGGTTGAGATTCTGGTGGATTTGCTGAGGAGGAATAAGTTTGACTCGGAGGCTACTCGGGAGAACTGCGTGGCTGCGCTGTACGCGCTGAGTCATGGGAGCTTGAGGTTCAAAGGGTTGGCAAAGGAGGCTAAGGCTGTGGAGGTACTGAGGGAGATTGAGGAGACGGGAACGGAGCGGGCAAGGGAGAAGGCTCGGAGGGTGTTGCAGACGATGAGGGCTGGTGAGGATCAACCAGGGTCACAGTTTGATAGCCTCTTCGAATCCGATGGGTTGCCTCGGACTCGCCACCGAGCTGCTGGTGCCTGGAACACCAACCATGTGAACTCAACCACATTTTAG 1581 0.5769 MGGNGKHRWKISFHRSSSHSKLEPPKEFLCPISGSLMSDPVVVSSGQTFERLSVQVCNDLKFSPNLNGTRPDFSTVIPNLAIKTTILNWCRKSATPPPCPPDYSAVESLVRQAMAAEPQESVRVSEKELLKAVADNPVMIGFSHAATELGPPRVNDFNSASSSEESVIIAASPPGTPLPLTTRPTCFSSSSSSSCEIEAQNPSGAPPSEEEARLVKMMKSNEVFEQEEGVVMLRSVTRNREEARVSLCTPRLLSALRLLVESRYVVVQVNAVASLVNLSLEKTNKVRIVRSGFVPFLIDVLKGGFSESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVANGNLASRVLLVLCNVAACVEGRTAMLDGNAVEILVDLLRRNKFDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLREIEETGTERAREKARRVLQTMRAGEDQPGSQFDSLFESDGLPRTRHRAAGAWNTNHVNSTTF* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5629 526 Gene3D - 211 507 IPR011989 -
Lja1g5629 526 SMART Ubox_2 27 89 IPR003613 GO:0004842|GO:0016567
Lja1g5629 526 Pfam U-box domain 25 92 IPR003613 GO:0004842|GO:0016567
Lja1g5629 526 ProSiteProfiles U-box domain profile. 23 96 IPR003613 GO:0004842|GO:0016567
Lja1g5629 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Lja1g5629 526 SMART arm_5 363 401 IPR000225 GO:0005515
Lja1g5629 526 SMART arm_5 281 321 IPR000225 GO:0005515
Lja1g5629 526 SMART arm_5 402 445 IPR000225 GO:0005515
Lja1g5629 526 SMART arm_5 322 362 IPR000225 GO:0005515
Lja1g5629 526 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 516 - -
Lja1g5629 526 SUPERFAMILY RING/U-box 12 93 - -
Lja1g5629 526 CDD RING-Ubox 29 76 - -
Lja1g5629 526 Pfam Armadillo/beta-catenin-like repeat 322 361 IPR000225 GO:0005515
Lja1g5629 526 PANTHER U BOX DOMAIN-CONTAINING 1 516 - -
Lja1g5629 526 SUPERFAMILY ARM repeat 213 489 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5629 Lja-Chr1 98791656 98794132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5629 1 526 U-box Gene Family AT5G65200 57.041 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5629 - - gmx:100815075 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5629 1 98791656 98794132 Lja1g5629 1 98791656 98794132 ECH