Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5624 ATGTCTTCTTCCACAACCTCTTCCAGACACCACACCTACAATCGAAAGCAAAAATCTCTCGGTCTCTTATGCACCAATTTCTTGAGCTTGTATAACAAAGAAGGCATCCACCTAATTGGCCTCGACGATGCCTGCTCACGATTAGGGGTCGAGAGGCGTCGGATCTATGATATCGTCAACGTCTTGGAGAGTGTTGGGATGCTTGCGAGAAAAGCTAAGAATCAATATACCTGGAAAGGCTTCGCTGTGATTCCAGAGGCGTTGCGCGAACTTAAGGATGAGGGTTTGAAGGAGAATCTATTTGATGCTGCTAATGACAGTGCCAAAGTGTCTGATGATGAGTATGATGAAGAAGCTAATCCAGCTACTGGAAGTCAAAATGACAAGTCCAACTCTGATTCTGCCACTCTTGTCAAGTCTTCACAAAATGAAAACAGAAAGGAAAAGTCTCTAACACTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATATTCAAATGGTCTCCCTTGACGATGCTGCAAAGTTGTTGCTTGGAAATGTTGATACTGCTATGATGAGAACAAAAGTCAGACGCCTGTATGATATTGCAAATGTGCTATCCTCTATCAACCTAATTGAAAAGACCCATATGGCAGAATCAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAAAGGGAAAACAAGGAGTGAGTCAGGGAACTCAGCCCAAGATCCAAATACCAACGAGTCGAGGAAAAGGCTGTTTGGAAGTGACATCACGAACATAAGCTTTAAGAGGAACAAAGTTGATCTGTTCATGAATGAGGGGGACTTTTACAAGAACTCTAACATGGAAAACAAACATGACAATCTCAATTGCCAAGGCCAATCAGAGAAAAGCAACTCAAAACAAGATGCAAAACAGACTACAGGGTGCTATCAGTTTGGCCCTTTCGCTCCGCGTAAAGTTGGGGCCTCTGAGAATGATAATGTGAAGCAGGTACATGATTGGGAGAGTCTTGCAAAGGCTCATCGTCCTCAGTATGAAAACCTAGCTTTGAGAGACCTCTTCTCGCACTACACGGAAGCGTGGAAATCTTGGTACTCTGAGGTAGCTGGGAAGAGACCATAG 1119 0.437 MSSSTTSSRHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKNQYTWKGFAVIPEALRELKDEGLKENLFDAANDSAKVSDDEYDEEANPATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLLGNVDTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRSESGNSAQDPNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQDAKQTTGCYQFGPFAPRKVGASENDNVKQVHDWESLAKAHRPQYENLALRDLFSHYTEAWKSWYSEVAGKRP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5624 372 MobiDBLite consensus disorder prediction 227 248 - -
Lja1g5624 372 Gene3D - 140 227 IPR036388 -
Lja1g5624 372 Gene3D - 10 82 IPR036388 -
Lja1g5624 372 MobiDBLite consensus disorder prediction 230 248 - -
Lja1g5624 372 PANTHER TRANSCRIPTION FACTOR E2F 6 366 IPR015633 GO:0000978|GO:0006357
Lja1g5624 372 SUPERFAMILY "Winged helix" DNA-binding domain 148 226 IPR036390 -
Lja1g5624 372 MobiDBLite consensus disorder prediction 109 143 - -
Lja1g5624 372 MobiDBLite consensus disorder prediction 285 304 - -
Lja1g5624 372 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 6 366 - -
Lja1g5624 372 SMART E2F_TDP_2 146 225 IPR003316 GO:0005667|GO:0006355
Lja1g5624 372 SMART E2F_TDP_2 15 80 IPR003316 GO:0005667|GO:0006355
Lja1g5624 372 SUPERFAMILY "Winged helix" DNA-binding domain 14 78 IPR036390 -
Lja1g5624 372 Pfam E2F/DP family winged-helix DNA-binding domain 16 80 IPR003316 GO:0005667|GO:0006355
Lja1g5624 372 Pfam E2F/DP family winged-helix DNA-binding domain 147 225 IPR003316 GO:0005667|GO:0006355
Lja1g5624 372 MobiDBLite consensus disorder prediction 120 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5624 Lja-Chr1 98547957 98552287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5624 10 372 E2F-DP Transcription Factor Family AT3G48160 52.815 1.25e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lja1g5624 E2F_TDP 4.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5624 K09391 - gmx:100806151 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5624 1 98547957 98552287 Lja1g5624 1 98547957 98552287 ECH
Lja4g2221 4 24317764 24321276 Lja1g5624 1 98547957 98552287 PCT