Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5618 ATGGATACCGCCGGCGATGTTCTCAGGCAGAGTTTACCCGCAATGGATGCAGGGGAGCTGCATGTGCTTGCTGTTGATGACAGCCATGTCGACCGCAAGGTCATTGAACGGTTGCTCAGAATCTCTTCTTGCAAAGTTACAGTTGTAGATAGTGGAACCAGAGCTTTGCAGTATCTGGGGTTGGATGGGGAGAAGAGCTCAATTGGTCTTGATAGTGTGAAGGTTAATCTGATAATGACAGATTATTCCATGCCTGGGATGACAGGGTACGAACTGTTGAAAAAAATAAAGCAGGAGTCATCTGTTTTCAGAGAGATTCCAGTGGTGGTTATGTCTTCTGAGAATATCTTGACCCGAATTGATAGTTGCTTGGAGGAAGGAGCAGAGGATTTTCTATTGAAGCCTGTAAAGTTGTCAGATGTTAAACGCCTAACAGATTTCATCATGAGAGGTGGAGAGAAGAAGGTTGAACAAAGATGTCAAAAAAGAAGCAGATCAGATGATTGCAGCTCATCTCTATCAACTGCATTCTCATTGGTTTCTCATCCATGCGATCTATCATCATCACCTGTTCTATCAACACTTTCACCATCTGCAATGTCATCAAAGAAATCTAGACTATGA 624 0.4311 MDTAGDVLRQSLPAMDAGELHVLAVDDSHVDRKVIERLLRISSCKVTVVDSGTRALQYLGLDGEKSSIGLDSVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVVMSSENILTRIDSCLEEGAEDFLLKPVKLSDVKRLTDFIMRGGEKKVEQRCQKRSRSDDCSSSLSTAFSLVSHPCDLSSSPVLSTLSPSAMSSKKSRL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5618 207 Gene3D - 20 194 - -
Lja1g5618 207 SMART REC_2 20 145 IPR001789 GO:0000160
Lja1g5618 207 Pfam Response regulator receiver domain 22 142 IPR001789 GO:0000160
Lja1g5618 207 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 207 IPR045279 GO:0009736
Lja1g5618 207 SUPERFAMILY CheY-like 19 152 IPR011006 -
Lja1g5618 207 ProSiteProfiles Response regulatory domain profile. 21 149 IPR001789 GO:0000160
Lja1g5618 207 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 16 207 - -
Lja1g5618 207 MobiDBLite consensus disorder prediction 186 207 - -
Lja1g5618 207 CDD REC_typeA_ARR 22 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5618 Lja-Chr1 98411750 98414432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5618 20 176 Response Regulator Gene Family AT3G48100 73.585 8.52e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g5618 Response_reg 2.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5618 K14492 - gmx:100306152 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5618 1 98411750 98414432 Lja4g2219 4 24295223 24297695 ECH
Lja1g5618 1 98411750 98414432 Lja1g5618 1 98411750 98414432 ECH