Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5617 ATGTCACCCCCAACTCATGCAATTGCAAAGGCTGTGGTTGCCACTGCTGTGATTACTTTTTTCATTGCAGGGTTTTTCTTCTACTTCTTCCAAAAATTTGTTCTTGCTCGATACCGCCGGCGAAACCAAGTGGCTGCAAGATTTCTTCAAGATCAAGGAGAAAGCCATGTAGATATACAAAAATTTGGTGGTAATGTGAGAGGACTAGTTGTTGAAGAAAATGGGGTTGGTGTTCTTTACATGATGGACTCAGAATGCAGAGAAATGAGAACTGGCTTCCCAAATAGTATATTCAATCCAAGTTTTGAAGATCATGAAGAGGAAAAGAGAATAATAGATGTAATGGTCCAAAGACAACACTTGCAACAATCACCTGAGTTAGCACTTTCTCTTCCACCTCTACCAAAACCTTCACCAATGAATCATGAGAAGAAAAATCAACCACCACCACCACCTCCACCTCCTCCTCCTCCTCCTCCACCACCTCCTCCTCCGCCTACCCCTCCTCCTCCCCCTGCTCCTCTTCTTTTTCGTCGTCCTCCTCTTTTTCCTCCTTCTCCACCACCACCACCTCTGCCTTCCTCTCCCACCACCATACATAGAAAAAGTGCAGCATCACCACCTGGTCCACCTCCACTTCCAAGCAGTGGCTTGTTCTCATCTTTCAAACCCCCACCTGCACCTAAAGGGAAACCAAACAAAAAAATCACCAAAAAGGCTGCAGTGGGGGAGAGTTCAAGAGAGAAGGGTCCTAGCCAAACCAGGTTGAAGCCTCTACATTGGGATAAGGTTCTAGCCAATGTTGATCATTCAACTGTGTGGGATCAGATCAACGATGGCTCTTTTAGGGTTGATGATGAACTCATGGAATCACTCTTTGGATACTCAAACAGTTACAAAACTAATGAAACAAAAAAAGCTCTTTCCAACTTGGCCAAGTCCAATTCCAACACACCATCTCAGATATTCATCCTCGAGCCACGAAAATCACAAAACACAGCAATTGTGCTAAGATCACTAGCAGTATCTCGCAAGGGAATCTTGGAAGCACTGCTCGAAGGTCAGGGTCTCAGTGTTGAGACACTTGAAAGGCTCACCAAAATAGCTCCTTCTCAAGAAGAAGAAGCCAAAATCATCCAATTCAGTGGCAACCCAGATAAGCTTGCTGATGCTGAGTCATTCTTATACTACATCCTGAAAGCAGTTCCAACAGCATTCAACCGTTTGAAAGCAATGCTTTTCAGGTCAAATTATGACTGTGAAGTTCTTCAGCTCAAGGAGAACCTCCAAACAATTGAAATGGGTTGTAAGGAGCTGAGAAATAGTGCTCTTTTTCTGAAGCTCCTTGAGGCCATTCTCAAAGCTGGGAACAGAATGAATGCTGGAACCTCAAGAGGCAATGCACAAGGTTTCAACTTGAGTGCTCTTAGAAAACTTTCTGATGTAAAAAGCACAGATGGGAAAACCAGTTTGCTTCACTTCATAGTAGAACAAGTAGTTCAGTCAGAAGGGAAAAGAGAAATTATCTATCAAAAGCACAATGGTGAAATCATACAAGAGGCAGAGAAAGAGTGTCTAATGCTTGGTTTTCCAGTGTTAGGTGGGTTAAGTGATGAGTTATATGAAGCAAAGAAAGCATCGAGCATTGACTACCACAATTTCATTACTACGTGTTCCAATCTCAGTGCTCATGTTGGTGAAATTAGACAGATAATAACATGCTGTGGCAACACTGAGAGAGGTGGATTCACTAGGGAAATAAAAGGGTTCCTAGAGGAATGTGAGGAGGAGCTTAAGGTGGTGAAAGAGGAGCAGAAAAGGATCATGGAGCTTGTGAGAAAAACAAATGAGTACTATCTAGCAGGAGCAATATCCAAAGATAACATGTCAAACCCCTTACAACTGTTTGTTATTGTGAAAGATTTTGCTGACATGGTAGATCAGGCTTGCATTGAACTAAAAAGGAAGATGGAAAAGAAGAGTGTAGGAGGAGAGCCTGGATATTCAACACCACCTTTGTCACCATCAAAGAGGACAGCACTTAGATTCCCTAACTTTGATTTGTATTTTCTGTCAAATAGGTCAGAAGCTACATCTTGCAGCCTGTCAGAAGATGATTTCTGA 2124 0.427 MSPPTHAIAKAVVATAVITFFIAGFFFYFFQKFVLARYRRRNQVAARFLQDQGESHVDIQKFGGNVRGLVVEENGVGVLYMMDSECREMRTGFPNSIFNPSFEDHEEEKRIIDVMVQRQHLQQSPELALSLPPLPKPSPMNHEKKNQPPPPPPPPPPPPPPPPPPPTPPPPPAPLLFRRPPLFPPSPPPPPLPSSPTTIHRKSAASPPGPPPLPSSGLFSSFKPPPAPKGKPNKKITKKAAVGESSREKGPSQTRLKPLHWDKVLANVDHSTVWDQINDGSFRVDDELMESLFGYSNSYKTNETKKALSNLAKSNSNTPSQIFILEPRKSQNTAIVLRSLAVSRKGILEALLEGQGLSVETLERLTKIAPSQEEEAKIIQFSGNPDKLADAESFLYYILKAVPTAFNRLKAMLFRSNYDCEVLQLKENLQTIEMGCKELRNSALFLKLLEAILKAGNRMNAGTSRGNAQGFNLSALRKLSDVKSTDGKTSLLHFIVEQVVQSEGKREIIYQKHNGEIIQEAEKECLMLGFPVLGGLSDELYEAKKASSIDYHNFITTCSNLSAHVGEIRQIITCCGNTERGGFTREIKGFLEECEEELKVVKEEQKRIMELVRKTNEYYLAGAISKDNMSNPLQLFVIVKDFADMVDQACIELKRKMEKKSVGGEPGYSTPPLSPSKRTALRFPNFDLYFLSNRSEATSCSLSEDDF* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5617 707 MobiDBLite consensus disorder prediction 205 231 - -
Lja1g5617 707 PANTHER FORMIN-LIKE PROTEIN 4 702 - -
Lja1g5617 707 PANTHER FORMIN-RELATED 4 702 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lja1g5617 707 ProSiteProfiles Formin homology-2 (FH2) domain profile. 246 672 IPR015425 -
Lja1g5617 707 PRINTS Proline rich extensin signature 178 190 - -
Lja1g5617 707 PRINTS Proline rich extensin signature 191 212 - -
Lja1g5617 707 PRINTS Proline rich extensin signature 143 155 - -
Lja1g5617 707 PRINTS Proline rich extensin signature 158 174 - -
Lja1g5617 707 SUPERFAMILY Formin homology 2 domain (FH2 domain) 207 660 - -
Lja1g5617 707 SMART it6_source 246 661 IPR015425 -
Lja1g5617 707 Coils Coil 591 614 - -
Lja1g5617 707 Pfam Formin Homology 2 Domain 248 646 IPR015425 -
Lja1g5617 707 Gene3D Formin, FH2 domain 268 662 IPR042201 -
Lja1g5617 707 MobiDBLite consensus disorder prediction 130 196 - -
Lja1g5617 707 MobiDBLite consensus disorder prediction 122 257 - -
Lja1g5617 707 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5617 Lja-Chr1 98406268 98408824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5617 8 705 FH2 protein (formin) Gene Family AT1G70140 41.655 2.25e-162 484