Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5614 ATGTCCAACACCGCCGTCTCCGGCGCCGGCGAGTTCATGCTCTTCGGCGTGAGAGTCACCGTCGACTCCATGAGAAAGTGCGTGAGCATGAACAACCTCTCCCAGTACGAGCACCCTCACGACGCCCCTAACAACAAAGAACACGCCGCCGGCTACGCCTCCGCCGACGAAGCCCCTGCTCCCCTCCCCGTCAAGCTCGCCAACCCCGACCGCAAGCGAGGGGTTCCATGGACGGAGGAAGAACACAAGCTATTCTTGTTGGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATTTCAAAGAACTTTGTCAAAACCCGGACGTCAACGCAAGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGCGCTAACCTCACGCGCCGCCGTCGTAGATCTAGCCTCTTTGACATCACCACCGACACTGTCTCTGCAGCCCAAATGGAGGAAGAGCAGATCCAGCATCAAGATAACATGTCCCATTCGTGTCCCATTTACCCTGCAACTGCAACTGAAACCCCTGAAAGTAGCAACCGGAATGGATATCCAATGATGCCCATGTATTCAATGGCAGTTGGTTCTGGAGTCAATTCAGTTCTAGCTAGGAATCAAATGGAGAAACTCACTTTGGGACAAGAAAATGTGGAACAGAATGAGGTAAGCAAGCTAGCCTGTACAATTCCTGCTGTTCCAGATCATAAAGCCTCTTCCAGTGTGTCTGATATCAGTTCCAATACAAGTTCAATTGTTGATCCACCAACACTGTCCCTGGGGCTATCTTTGTCATCTGATCAAAGACAGAAATCACCAAGACATACACCTTTACATGCAGTGCCGTGCTTTAACAATGAAGATAGCATCATAACTGTTGCTTGA 879 0.504 MSNTAVSGAGEFMLFGVRVTVDSMRKCVSMNNLSQYEHPHDAPNNKEHAAGYASADEAPAPLPVKLANPDRKRGVPWTEEEHKLFLLGLQKVGKGDWRGISKNFVKTRTSTQVASHAQKYFLRRANLTRRRRRSSLFDITTDTVSAAQMEEEQIQHQDNMSHSCPIYPATATETPESSNRNGYPMMPMYSMAVGSGVNSVLARNQMEKLTLGQENVEQNEVSKLACTIPAVPDHKASSSVSDISSNTSSIVDPPTLSLGLSLSSDQRQKSPRHTPLHAVPCFNNEDSIITVA* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5614 292 CDD SANT 76 121 IPR001005 -
Lja1g5614 292 SMART sant 73 123 IPR001005 -
Lja1g5614 292 MobiDBLite consensus disorder prediction 235 279 - -
Lja1g5614 292 Pfam Myb-like DNA-binding domain 76 121 IPR001005 -
Lja1g5614 292 PANTHER KIN2 11 292 - -
Lja1g5614 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 125 IPR017930 -
Lja1g5614 292 ProSiteProfiles SANT domain profile. 72 125 IPR017884 -
Lja1g5614 292 ProSiteProfiles Myb-like domain profile. 76 121 IPR001005 -
Lja1g5614 292 Gene3D - 77 126 - -
Lja1g5614 292 MobiDBLite consensus disorder prediction 237 269 - -
Lja1g5614 292 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 11 292 - -
Lja1g5614 292 SUPERFAMILY Homeodomain-like 71 125 IPR009057 -
Lja1g5614 292 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 72 123 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5614 Lja-Chr1 98380567 98382843 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g5614 Myb_DNA-binding 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5614 - - gmx:778057 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5614 1 98380567 98382843 Lja4g2212 4 24155579 24158053 ECH
Lja1g5614 1 98380567 98382843 Lja1g5614 1 98380567 98382843 ECH
Lja4g2212 4 24155579 24158053 Lja1g5614 1 98380567 98382843 PCT