Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5604 ATGGACCCTCCTCTCATCAACGACTCCACATTCTCCTCCGCTTTCGCTCTCGCCGAGATTTGGCCCCGACCAGGCGGAGGAGCAGATGAACATTCCACCGTCACCCAACTCACCGCCGCCGCCCGAAATCACGGCAGCAGGATCAAGATGAAGAACAACAACGACTCCACCACCTCCGAGGACGATTGCTCCAAGAATGATTCAGGCAATAAAAGGATAAGATTAGGAGGAGGAGGATCTACTGTTGAGAATGGTGGAGGTGGAGGTTTGAAAGCTGCAGAAGCTAGTTCAGTGGCTGGAAGCAACAACTCTGATGAACAAAGCACTAAGCCTTCAGAATCAGAGCCACCTAAGCAAGACTATATTCATGTGAGGGCAAGAAGGGGGCAAGCTACAGATAGCCACAGCATAGCAGAGAGAGCTAGAAGGGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCCGGGTGTAACAAGATGATTGGTAAAGCACTTGTTCTGGATGAGATAATTAATTACATCCAGTCGCTGCAGCATCAGGTTGAGTTCCTATCGATGAAGCTTGAAGCAGTTAATTCAAGAGCCAACTTGAACCCAACAAATGAAGGGTTTCCTTCAAAAGATGTTGTTACCCAGCCATTTGACATTGCTGGAGTGATATATGAATCACAAGCAGCAAGGGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCAGATTGGTGGGGGTTTTGAAGGAGCAACGTAA 762 0.4816 MDPPLINDSTFSSAFALAEIWPRPGGGADEHSTVTQLTAAARNHGSRIKMKNNNDSTTSEDDCSKNDSGNKRIRLGGGGSTVENGGGGGLKAAEASSVAGSNNSDEQSTKPSESEPPKQDYIHVRARRGQATDSHSIAERARREKISERMKILQDLVPGCNKMIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRANLNPTNEGFPSKDVVTQPFDIAGVIYESQAARGYAQGSHPGWLHMQIGGGFEGAT* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5604 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 197 IPR036638 GO:0046983
Lja1g5604 253 MobiDBLite consensus disorder prediction 54 69 - -
Lja1g5604 253 MobiDBLite consensus disorder prediction 96 110 - -
Lja1g5604 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983
Lja1g5604 253 PANTHER BNAC05G07950D PROTEIN 1 251 - -
Lja1g5604 253 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
Lja1g5604 253 MobiDBLite consensus disorder prediction 40 118 - -
Lja1g5604 253 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 251 IPR024097 GO:0006355
Lja1g5604 253 Coils Coil 177 197 - -
Lja1g5604 253 Gene3D - 127 202 IPR036638 GO:0046983
Lja1g5604 253 SMART finulus 136 186 IPR011598 GO:0046983
Lja1g5604 253 CDD bHLH_AtBPE_like 120 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5604 Lja-Chr1 98163821 98168950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5604 1 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 51.014 3.24e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g5604 HLH 7.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5604 - - gmx:100777819 318.546