Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5602 ATGGTGAAGTCTCCATGCTGTGAGAAAATCAGTGTCAGTAGAGGTGTACAGTCTGCAGAAGAAGATGGAATGGTACTTCCATTTGTCTCAAAGCATGGATCTAGTAATTGGACTTCTGTCCCCAAAAAATCTGGGCTTAAGAGGTGTGGAAAAAGTTGCAGGCTTAGGTGGACTAACTATCTCAAGCATGATCTTGAGCAGGATGGATTCACACCCCAAGAAGAAGATCTAATCATCAAGCTTCACGCAGCCATAGGTAGCAGGTGGTTTATAATAGCCCAACAGCTTCCTGGGAGAACAGACAATGATGTAAAGAACTACTGGAACTCAAAGCTGAAAAAGAAGCTTTCTCAAATGGGGATAGACCCTGTTACTCACAAACCATTCTCTAAACTCATTGCTGACTATGGAAACATTGGTGGTAGCCAGAAACCAAGTTCCCCAATTGGGTCTTTCGACAAAGACTTCAAGAATGCAATCCAATTAAGATCAGAGTCATATCAAACAATGCCACAAGGATCTAGAAACACCAATAACCAAGCAAATCAGCCACCCAAAATGGAAACAATTGGAAATAGCTTTTCAATCAGCACAAGTATTCCCAGTGATAACCTCCCAATGATAATAGTGCCTGGTGCCTCAAATTACATAGACTTAGAGAATGAGACTGTTCTGCCAACATCTATATATGAAGAAGGTGAAGCTAGCTTGTCAAAAACTTCATCACCATCTGCTTCTTCCACTTGTTCCACTTCAGCACAAGAAGCCTTACCTGTACCCTTCAGCTGGAATGACTTCCTTCTAGAAGAGGTCTTTGCACAAACAGGTGATGACCAAGAACAAGAAATTGTGGGTGGATTCATGTCAAATGACATGGTAAGTCAAATGGAGAATGTGACAAGTCAAAGTTGGAACAAGAAAGAGGCTATGTCATCATCCTCTGACATTTCATTCCTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTTCTAAGTTTTCCTCACCTTATGGAGGAACCTTCCAACTACTGA 1032 0.4138 MVKSPCCEKISVSRGVQSAEEDGMVLPFVSKHGSSNWTSVPKKSGLKRCGKSCRLRWTNYLKHDLEQDGFTPQEEDLIIKLHAAIGSRWFIIAQQLPGRTDNDVKNYWNSKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGSQKPSSPIGSFDKDFKNAIQLRSESYQTMPQGSRNTNNQANQPPKMETIGNSFSISTSIPSDNLPMIIVPGASNYIDLENETVLPTSIYEEGEASLSKTSSPSASSTCSTSAQEALPVPFSWNDFLLEEVFAQTGDDQEQEIVGGFMSNDMVSQMENVTSQSWNKKEAMSSSSDISFLEAMLDQENEMFLSFPHLMEEPSNY* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5602 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lja1g5602 343 Gene3D - 18 66 - -
Lja1g5602 343 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g5602 343 SMART sant 13 63 IPR001005 -
Lja1g5602 343 SMART sant 66 114 IPR001005 -
Lja1g5602 343 CDD SANT 70 112 IPR001005 -
Lja1g5602 343 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g5602 343 PANTHER F14D16.11-RELATED 1 343 - -
Lja1g5602 343 SUPERFAMILY Homeodomain-like 18 108 IPR009057 -
Lja1g5602 343 MobiDBLite consensus disorder prediction 166 189 - -
Lja1g5602 343 Pfam Myb-like DNA-binding domain 18 61 IPR001005 -
Lja1g5602 343 Pfam Myb-like DNA-binding domain 70 110 IPR001005 -
Lja1g5602 343 Gene3D - 69 128 - -
Lja1g5602 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 116 IPR017930 -
Lja1g5602 343 CDD SANT 18 61 IPR001005 -
Lja1g5602 343 PANTHER F14D16.11-RELATED 1 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5602 Lja-Chr1 98128672 98130498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5602 1 339 MYB Transcription Factor Family AT3G28470 40.678 1.19e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g5602 Myb_DNA-binding 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5602 K09422 - gmx:100795381 398.667