Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5599 ATGTCCCAAGGATCTCCGCCTCCTCCTCCGCCGCAGTCCACCGCCGAACCCAGCAACCCACCCTCGCCGGAAAAGGAGGAGCCCGCCGCTCAACCCGCCGGAACCCGGACTCGCCCCTCCCGAGCCTGCACCATCCGCGCAGCGCAACGTCTCCACTCGGCTTCCCAGCCGGCGATCGAGCGCCGGTCCAAGTCTACGGCGTCGAAGAAGGAGCAGCGCCGTGAGGTCTCGCCGTCGCCGCCCCCGTCTCCGCCTCAGCAATGCAGTAAGATCGTGACGACGCTGGTGGAACCGCCCTCGCCGTCGCAGTTGCCGCGGTGGAAGCTCCGGTCCATGTGGGAGTTCGCTTCCGTGCTCAATTTCCTGCATTTGTTTAGGCCCCTTTTGAATATATCAGTTGAATTCTCTGCTGAAGAGTTTGAGACTGCTCTTCTTACCCCCAATGACACGTTGAGTGATGTACACATGCCTTTGTTAAAGGCAATCCCTCCCATTACTCGAATGGCACTCTCACGTGATACTTGGATTACCGTATTGTGCAGAAAATTGAGAGATTGGTGGCACTGGGTTGCTGAGGGGGATATCCCTGTTGTAGCTTCACATGGGGCGGAGATTGATGTATATAAATCACTTGATCCTGGAGTCCGTGTCATTATCTTAAAAGCACTATGTGACATTCGTGTTGAGCAAGAAGATATTCGAAGTTACATTGACAACTCAGTAAAACATGGTGTTCAACTTTCAACATTCCGTAAGGAGCGTGTCGGTGGTGATTCACATGGAGTTTCCTTTTGGTATGAAGATGATCCAATTATTGGTCATAGATTGTATCGGGAAATAAGGAAAACTGAAGTGGTTCAATTGAAGAAAGGGAAACCAAGAGGCTCCCAGGTTCTTTCAAATACAACGTACCAGTGGGAAACTGTTGCTACCAACTTTGATGAATTTCAGGATGTTTCTGAGAAGCTTTTTTCAAGTAAAAACAGAATGGAGGTTTCTGTAGGTAAAAAGATTAAAATAGACATGCTTCCTGAAGTTGAGATAGTTCACAAGAGAAAGGAGAGGTTAATGAAGAAACAACATAGACAAGCCCTTCTTCTTGATAATTTCTTGGGCGTTGATGGGCTTGCCACAGGGCGTTCACTTCGTGATAGGAAACCGGTTACCTACACTTTTGATGATTACGATCGTTCCATCAATGAGGCTATTAAGATAACCAAACAGAAACAACCATCCCCAGAACCTATACACAGGAGAGAAACACGAGCAAGACCTGAAGTGTTAGCTAATGGTAAATTGAGCGGTCCCTCACATGCCCCTCAACATCTGGATTTTAGTATGCCATCTCCGAATTCACCTGACTTTGATGATTTGGAGGATGAAGAAAATCAAACAGACGCATTGGACCGAAGCAATCGGCGAAGGCAGAGACCTAATCGATATTCAGAGAAAGACTTTGTTGAAGCAGTGTCAGATATTGACGCTGATTTTGACAGTGATGATGATATTGTTGGGGAAGCCGTATATGATGAAGAATATCTCCGGAAACGTAAGCAGAGAAGGAAAGCATCAAGTAGCTCTGCTTCTGAAGGAGATGATGAATATCATGGGGATGAAGATAATGTTGAAGATGAAGAGGAAGAAGAAGACGACATAGATTTCTCGAGTGTCAGTGAGGACAGTGACAAGCCTCGTAAAATCAAGCAATTGCCTGGCCGTACTCGGAGGGAAGCTAAACGCAGGTCTGTGGGTGAGATTCAATCAAGTTTGAGACGTAGTAAGAGGGCAACTAGGAACCGTATAGACTACAGACAGTTAGAGTTGTCTGAGTCAGAAACAGAGTTAACTAAGCCTGAGAAGTCGTCCCATGCATCAGAAGATCATCGCTCACATCCCAGTGAGAATGGGGAGTATATGATGGAAAGTGAAGATTCAGATGGCAATGATGATGAAGATCAGGAAATGAAAGTAACGGAGCCAGTTTCTCACCCCGCAGTAGGAGAGAACGAAGATCCTGCCGTCGGAGAGAACGAACAAAACCATGACCCGCCTCCTATAAAATCAAGTAGTCCGGGTCAGGAGGAAGCTGAAGGTATGACAAAAAGACGTTTCCTTGATTTGAATGAACTTGCCCCTAGTTCTGGTTTTGATGATGGTCCAAATACTGCAACCAAAGATGAAGGCAATGATGATTACTGA 2199 0.4688 MSQGSPPPPPPQSTAEPSNPPSPEKEEPAAQPAGTRTRPSRACTIRAAQRLHSASQPAIERRSKSTASKKEQRREVSPSPPPSPPQQCSKIVTTLVEPPSPSQLPRWKLRSMWEFASVLNFLHLFRPLLNISVEFSAEEFETALLTPNDTLSDVHMPLLKAIPPITRMALSRDTWITVLCRKLRDWWHWVAEGDIPVVASHGAEIDVYKSLDPGVRVIILKALCDIRVEQEDIRSYIDNSVKHGVQLSTFRKERVGGDSHGVSFWYEDDPIIGHRLYREIRKTEVVQLKKGKPRGSQVLSNTTYQWETVATNFDEFQDVSEKLFSSKNRMEVSVGKKIKIDMLPEVEIVHKRKERLMKKQHRQALLLDNFLGVDGLATGRSLRDRKPVTYTFDDYDRSINEAIKITKQKQPSPEPIHRRETRARPEVLANGKLSGPSHAPQHLDFSMPSPNSPDFDDLEDEENQTDALDRSNRRRQRPNRYSEKDFVEAVSDIDADFDSDDDIVGEAVYDEEYLRKRKQRRKASSSSASEGDDEYHGDEDNVEDEEEEEDDIDFSSVSEDSDKPRKIKQLPGRTRREAKRRSVGEIQSSLRRSKRATRNRIDYRQLELSESETELTKPEKSSHASEDHRSHPSENGEYMMESEDSDGNDDEDQEMKVTEPVSHPAVGENEDPAVGENEQNHDPPPIKSSSPGQEEAEGMTKRRFLDLNELAPSSGFDDGPNTATKDEGNDDY* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5599 732 MobiDBLite consensus disorder prediction 404 483 - -
Lja1g5599 732 MobiDBLite consensus disorder prediction 1 89 - -
Lja1g5599 732 Pfam DDT domain 117 162 IPR018501 -
Lja1g5599 732 MobiDBLite consensus disorder prediction 465 483 - -
Lja1g5599 732 MobiDBLite consensus disorder prediction 533 556 - -
Lja1g5599 732 MobiDBLite consensus disorder prediction 411 426 - -
Lja1g5599 732 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 22 731 - -
Lja1g5599 732 PANTHER REMODELING AND SPACING FACTOR 1 22 731 IPR028938 GO:0006355|GO:0031213
Lja1g5599 732 MobiDBLite consensus disorder prediction 576 638 - -
Lja1g5599 732 MobiDBLite consensus disorder prediction 507 732 - -
Lja1g5599 732 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g5599 732 MobiDBLite consensus disorder prediction 508 532 - -
Lja1g5599 732 MobiDBLite consensus disorder prediction 639 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5599 Lja-Chr1 98022600 98038239 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lja1g5599 DDT 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5599 - - gmx:100796430 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2195 4 23657462 23665706 Lja1g5599 1 98022600 98038239 PCT