Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5596 ATGCAACATCCAAAAATGCTTCTATACAAGGATAACATTCATGAAACTCATTATGAGGTCCTCAATGTCAAGGAAGACGCGGACTATGAAGAAATTCGTGCCAGTTACAGAACTGCCATCCTCAGTTTCCATCCTGATAAACTATTGAAGTCACCTGAGACATCATCCAGCAATGATCTACCAACTGGAGAGAGATTTCTCAAAGTGCAAAAGGCATGGGAAATTCTAAGCAATTCGAGCTCTCGCTCATCTTATGATAATGAGTTGCAAAGCTTGAGGCATGATTATGATGATGTCTTGGATGCTGATGTTGCAGAAGATTTGAACTTACAAGATATGATGGCTGAAGATGGTGGTGGAGCATTGGAGCTGTTTCATCAGTGCCGATGTGGCGATTACTTCTCTGTTGACTCTTTGGAATTGAGGAAAATGGGGTATTCCTTGTCAAGTGAAGGAAATAGAATATCTGTAGTCAATCCTGATTCTTCATCAGGATCAGTGATTCTTCCCTGTGGATCTTGTTCATTAAAAGCTCGTCTAGTACTTAGTATGGATGACAATTGA 564 0.4043 MQHPKMLLYKDNIHETHYEVLNVKEDADYEEIRASYRTAILSFHPDKLLKSPETSSSNDLPTGERFLKVQKAWEILSNSSSRSSYDNELQSLRHDYDDVLDADVAEDLNLQDMMAEDGGGALELFHQCRCGDYFSVDSLELRKMGYSLSSEGNRISVVNPDSSSGSVILPCGSCSLKARLVLSMDDN* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5596 187 SMART dnaj_3 15 81 IPR001623 -
Lja1g5596 187 CDD DnaJ 16 76 IPR001623 -
Lja1g5596 187 PRINTS DnaJ domain signature 61 81 IPR001623 -
Lja1g5596 187 PRINTS DnaJ domain signature 18 36 IPR001623 -
Lja1g5596 187 PRINTS DnaJ domain signature 36 51 IPR001623 -
Lja1g5596 187 ProSiteProfiles dnaJ domain profile. 16 89 IPR001623 -
Lja1g5596 187 SUPERFAMILY CSL zinc finger 105 186 IPR036671 -
Lja1g5596 187 Pfam CSL zinc finger 108 181 IPR007872 -
Lja1g5596 187 Pfam DnaJ domain 16 86 IPR001623 -
Lja1g5596 187 Gene3D DPH Zinc finger 98 187 IPR036671 -
Lja1g5596 187 SUPERFAMILY Chaperone J-domain 14 89 IPR036869 -
Lja1g5596 187 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 6 184 - -
Lja1g5596 187 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 104 183 IPR007872 -
Lja1g5596 187 PANTHER DPH3 HOMOLOG-RELATED 6 184 IPR044248 GO:0017183|GO:0046872
Lja1g5596 187 Gene3D DnaJ domain 3 95 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5596 Lja-Chr1 97989914 97995187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5596 17 86 C2H2 Transcription Factor Family AT1G74250 38.571 2.73e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5596 K17867 - gmx:100814856 244.202