Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5592 ATGAACATGGACATGGATTTCTACCACCTTAATTCAAAGTGGGTATCAACAGTAGCAAGCATATGGATTCAATGCACAAGTGGGTCACTCTACACATTCTCCATATATTCCCAAACACTCAAGTCAACGCAGCACTACGACCAGTCAACGCTCGACATCGTCTCTGTTTTCAAGGACATCGGAGTCAACGTCGGAGTTATCGCCGGTCTCCTATATGATTTCCTTGCCCGCCGCGGAAACACGACTGGGCCTTGGGTTATTCACTTCTTGGGCTCGGTCCTATGCTTCTTGGGCTATTTTCTCATGTGGGCCGCCGTCGTCGGCGTCCTTTCGCCGGTTCCGGCGCCGGTGATGTGCTTGTTCATGTTCGTGGCAGCTCATGCTCAGAGCTACTTTAACACTTCTAATGTTGTCACCGGCGTTCGTAACTTCCCTAATTATAGCGGAACTATCGTTGGGATTATGAAGGGCTTTCTTGGTCTCAGTGGAGCAATATTAATACAAGTGTACAAAGCAACATTCAACAACAAGCCTATGAATTATCTGCTGATGTTAGCACTCTTACCACCTATCAATACTCTGTTGCTTATGTGGTTTGTAAGAATCCACAACACTCATGAGGGAGAAGAAAGGAAGTATCTAAACATATTTTCTTTGATGTCTCTGGTTATTACTGCATATCTTATGGTGGTTATAATTCTAGAGAACATCCTCAGCCTGCAGTTATTTGTTCACATCGTTATAGTCATTGGGCTTATGGTGTTGCTAGCCTCACTTCTTTGCATTGCATTTAAAGCACAAGAAAGGAGCTCAACTAGTGCTTCAGAAAGTTTTCTTGATGAGGGGTCCCAACTAATTGTGGAGCCTGAGCCCCTGGATACCGAGAAGATGGATGCAAGGCCGGATTCTTCCAGCAACCCTTTGCTTGATACCAAGAGTCAAAGGGCCCTGCAACTAGGAGAAAACCTGAATCTTGTTCAAGCAGTGCAGACGGTGAACTTTTGGATCTTGTTTGTTTCTATGGCATGTGGTATGGGAGCCGGACTTGCAACAGTTAATAATATGGGCCAAATAGGGGAATCCCTTGGTTATACCAGCCATGAGATAAGTTCCTTGGTCGGTTTATGGAGCATTTGGAATTTTCTCGGCCGTTTCGGAGCTGGTTATGTGTCAGATTATTTTTTACACACTAGAGGATGGGCAAGACCTTTATTCATGGTCATCACTTTGTTGGTCTTGAGCATTGGCCTTGTGGTGATTGCTTCTGGACTGCCGAATGCGCTATATGTTGGTTTGATATTAGTTGGTATTTGTTATGGCTCTCAATGGTCCCTAATGCCCACAATCACTTCTGAGATATTTGGTGTGGGACATATGGGTAGCATATTCAACACCATTACAATAGCAGGTCCAGTGGGATCTTATATATTCTCTGTAAGAGTAGTTGGGTATATATACGATAAAGAAGCATCAGAAGGAAATACATGCACTGGAACTCATTGTTTCATGTTTGCTTTTCTCATAATGGCTTCTGCCACTCTTCTAGGTTCTCTCACCGCTTTAGCTCTGTTTTTCCGGACCAAAAACTTTTATGCTGAGGTTGTACTCAGAAGAATTCGAAATATTCTGTGA 1632 0.4375 MNMDMDFYHLNSKWVSTVASIWIQCTSGSLYTFSIYSQTLKSTQHYDQSTLDIVSVFKDIGVNVGVIAGLLYDFLARRGNTTGPWVIHFLGSVLCFLGYFLMWAAVVGVLSPVPAPVMCLFMFVAAHAQSYFNTSNVVTGVRNFPNYSGTIVGIMKGFLGLSGAILIQVYKATFNNKPMNYLLMLALLPPINTLLLMWFVRIHNTHEGEERKYLNIFSLMSLVITAYLMVVIILENILSLQLFVHIVIVIGLMVLLASLLCIAFKAQERSSTSASESFLDEGSQLIVEPEPLDTEKMDARPDSSSNPLLDTKSQRALQLGENLNLVQAVQTVNFWILFVSMACGMGAGLATVNNMGQIGESLGYTSHEISSLVGLWSIWNFLGRFGAGYVSDYFLHTRGWARPLFMVITLLVLSIGLVVIASGLPNALYVGLILVGICYGSQWSLMPTITSEIFGVGHMGSIFNTITIAGPVGSYIFSVRVVGYIYDKEASEGNTCTGTHCFMFAFLIMASATLLGSLTALALFFRTKNFYAEVVLRRIRNIL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5592 543 CDD MFS_Mch1p_like 12 516 - -
Lja1g5592 543 Pfam Nodulin-like 13 263 IPR010658 -
Lja1g5592 543 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 9 541 - -
Lja1g5592 543 SUPERFAMILY MFS general substrate transporter 217 531 IPR036259 -
Lja1g5592 543 ProSiteProfiles Major facilitator superfamily (MFS) profile. 332 543 IPR020846 GO:0022857
Lja1g5592 543 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 541 - -
Lja1g5592 543 SUPERFAMILY MFS general substrate transporter 14 204 IPR036259 -
Lja1g5592 543 Pfam Major Facilitator Superfamily 337 527 IPR011701 GO:0022857|GO:0055085
Lja1g5592 543 Gene3D MFS general substrate transporter like domains 324 532 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5592 Lja-Chr1 97890337 97893494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5592 10 541 Nodulin-like Gene Family AT1G74780 53.506 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5592 - - lja:Lj1g3v0437880.2 1061.6