Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5590 ATGGAGTGGGTGGCGAATCGTTGGACAGGCGTAGCAGCAGCGATATGGATCCAGTGGAGCTGCGGTGCATCCTACACCTTCAGCATCTACTCCCCAATCCTCAAATCCACACAAGGCTACGACCAATCCACTCTCGACACCGTCTCCGTCTTCAAAGACATCGGAGCCAACTTCGGCGTCCTCTCCGGCCTCCTCTACTCCGCCGTCACTCCCTACTTCAACCGCCGTGACACCAAATGGACCTCCTCACTCGCCGGACCCTGGATTGTTGTTGCCGTTGGCGCCGTCCAGTGCTTTGTTGGCTTCTTCTTCATCTGGGCCGCCGTCGTCGGGCTGATCGACCCGCCGCCGGTGCCTGTTATGTGCTTCTTCGCCTGGCTTGCGTCTAATGGCCAGACGTTCTTGAACACTACCAACGTCGTCACTGGTTTGCGCAATTTTCCCCAATTTAGTGGCACCATCATTGGTATCATGAAGGGCTTTCTTGGGCTCAGTGGAGCTATCCTGATTCAGCTGTATCACACATTTTGTGATGGTGACCCTGCTACTTACCTTTTGATGCTTGCTTGCCTACCTGCTTTCATTTGTGTGTTGCTCATGTTTCTGTTGAGGATCTATGAAGTGCACGGGGGTGATTACAAGAAGCATTTGGATAGTTTCTCCGTGGTCACGATGATTATTGTTGCCTATCTCATGTTCATAATAATTTTGCAAAACTTTGTGACTTTATCATATTGGGCGCGGATGTTTGTATTTGTGTTACTTGTGGTTCTACTAGCATCGCCTTTTGGCATTGCTGTCAAAGCCCAGTGGGAGGAGTCGCGGGAACTCGCCGCCGCTTCAATGGAATATCAACAGCTGCCTAGTGATGAGGGGGGAGCACAGGTGGGTCCAGATGATGTGATGCCACGTGAAGAAGAAAAGAACCTCTTGCAAGCTATGTGCACGGTTGAATTCTGGATGTTGTTTGTGACCATGATATCAGGATTGGGTTCTGGGCTTGCAACTATAAATAATATGAGCCAAATTGGGGAATCTCTTGGGTATAGTACTATTGAGATTAATAATTTGGTGTCACTTTGGAGCATGTGGAATTTCCTTGGCCGTTTTGGAGGTGGTCACGTATCGGATTATATCATGCACAAAAGAGGTTGGCCTAGGCCCCTGTTGATGGTTGTAACTCTAGGGGTAATGATTATTGGCCATGTAGTTATAGCTTCTGGTTTCCGTGGGAATTTGTATTTGGGTCCTGTTCTGGTGGGCATCAGCTATGGTGCACATTGGTCCTTAATGCCTACAATCACTTCTGAGATATTTGGTGTGAAGCATATGGGTACCATTTTCAATACTATTGCTGCAGCAAGCCCAATTGGGTCTTATATACTTTCTGTGAGAGTTGTTGGATATATTTATGACAGGGAAGCTATTGAAGAAGATAACTCATGCTTTGGCATCCACTGTTTCATGTTGTCATTTTTTATTCTGGCTGGTGTGGCTTTTCTTTCATTTTTGGTTGGTCTGGCATTGTACTTCCGGACACAAAAGTTCTATAAGCTAGTTGTTCTTAGAAGATTAAAACATTATGCACGATGA 1593 0.4689 MEWVANRWTGVAAAIWIQWSCGASYTFSIYSPILKSTQGYDQSTLDTVSVFKDIGANFGVLSGLLYSAVTPYFNRRDTKWTSSLAGPWIVVAVGAVQCFVGFFFIWAAVVGLIDPPPVPVMCFFAWLASNGQTFLNTTNVVTGLRNFPQFSGTIIGIMKGFLGLSGAILIQLYHTFCDGDPATYLLMLACLPAFICVLLMFLLRIYEVHGGDYKKHLDSFSVVTMIIVAYLMFIIILQNFVTLSYWARMFVFVLLVVLLASPFGIAVKAQWEESRELAAASMEYQQLPSDEGGAQVGPDDVMPREEEKNLLQAMCTVEFWMLFVTMISGLGSGLATINNMSQIGESLGYSTIEINNLVSLWSMWNFLGRFGGGHVSDYIMHKRGWPRPLLMVVTLGVMIIGHVVIASGFRGNLYLGPVLVGISYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPIGSYILSVRVVGYIYDREAIEEDNSCFGIHCFMLSFFILAGVAFLSFLVGLALYFRTQKFYKLVVLRRLKHYAR* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5590 530 SUPERFAMILY MFS general substrate transporter 225 515 IPR036259 -
Lja1g5590 530 SUPERFAMILY MFS general substrate transporter 5 204 IPR036259 -
Lja1g5590 530 Gene3D MFS general substrate transporter like domains 310 519 IPR036259 -
Lja1g5590 530 CDD MFS_Mch1p_like 7 501 - -
Lja1g5590 530 Pfam Nodulin-like 7 266 IPR010658 -
Lja1g5590 530 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 528 - -
Lja1g5590 530 Pfam Major Facilitator Superfamily 322 515 IPR011701 GO:0022857|GO:0055085
Lja1g5590 530 PANTHER F25A4.25 PROTEIN 3 528 - -
Lja1g5590 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 317 530 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5590 Lja-Chr1 97858019 97860929 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5590 1 527 Nodulin-like Gene Family AT1G74780 57.865 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5590 - - gmx:100799596 909.442