Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5588 ATGACCCTTAAGGGTGGAGTAACCCTAGCATGTGCAGCATGCAAACACCAGAGGAGAAAGTGTACCCCAGAGTGCCCTCTTGCTCCATACTTTCCAGCAGACCAACCCAAATTGTTCATGAATTGCCACAAGTTATTTGGAGTGAGCAACATTGTCAAGATATTAAACCAAGTAGAACCTTGTCAAAAGGGAATAGCCATGGACTCTCTCATTGCTCAGGCAAATTACAGGGAAAAATACCCGGTTCACGGTTGCTGCGAAGCAATAAACCGGGTTAGGTACCAGATATGGCAAATGGAAGAAGAGCTTCTTCTTCTTCGTCACCACCTCGAGATGTGTCAGCAACAACATCATCAGCAGTCTATTCTTGAAGATGTTACTTCTCCGTTAGAATTGGGAATGACACCATGTGCTAATTCCCTCCAGCAACAATCTTACTCCAATAGCAATTGTGTGGCCTACAACAACTCATGCATCATGGATTCCAAGGATATTAATGTCACAAATCCATTGTGGGCAAATGATCACAATAGCAATTCCATGTCTGGGCAAAAGCAATTGGTTACAACACAACTTCTTTCAATCCAAGAAGAAGTTGTTGAGAATTATGATGAGATGAATCCGTTTTTTGACACAATTGACGACAGACAATCATATATCTGTTCCAAGGAGTCTTATGAATCAAGTACTTCAGAAGAATCACTAAAAGATACGCGAAAATGCATTGAGCATGTTGCTGAGAATGAATTGAAGAATGCTGCTGCATGCTTCAGCCTTACAAGTGTTAGCTAG 792 0.4167 MTLKGGVTLACAACKHQRRKCTPECPLAPYFPADQPKLFMNCHKLFGVSNIVKILNQVEPCQKGIAMDSLIAQANYREKYPVHGCCEAINRVRYQIWQMEEELLLLRHHLEMCQQQHHQQSILEDVTSPLELGMTPCANSLQQQSYSNSNCVAYNNSCIMDSKDINVTNPLWANDHNSNSMSGQKQLVTTQLLSIQEEVVENYDEMNPFFDTIDDRQSYICSKESYESSTSEESLKDTRKCIEHVAENELKNAAACFSLTSVS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5588 263 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 209 - -
Lja1g5588 263 Pfam Lateral organ boundaries (LOB) domain 10 105 IPR004883 -
Lja1g5588 263 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lja1g5588 263 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 9 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5588 Lja-Chr1 97826410 97827742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5588 1 225 AS2 family AT3G47870 36.721 6.87e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g5588 LOB 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5588 - - lja:Lj0g3v0348179.1 453.751