Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5586 ATGGTGAACAAAAAGCGAAATCCTCGCTCCAAACAGCCGCCGCCGGCCACCACAACCGACCCGAACGCGGTTTCCGATGAAGCTATCAGAATCGTTACTTCTCAATCCGCCGCTGTGCCGCGCTCCGCGATCAAAGCGGAGTGCGAGCGAGCCCTAACTGCTCTCCGGCGCGGCAACAACGCTCGTGCTCTGAAGCTGATGAAGGATTGCTGCTCCCGCCACGAGAATTCGCCTCACTCGGCGTTCCTCCACCGCGTCCACGGCACGGTGTGTGTCAAAGTCGCGGAGGTTATGGACGACCCGAACGCGAAGCAGAGGTACCTGAAGAACGCCGTCGACTGCGGGAAGAAAGCGGTTGAGCTCTCGCCGAATTCGATCGAGTTCGCGCATTTCTACGCGAGCTCGCTCTATGATACCGCGAGCGATGGCGGCGAGTATGAGGAGGTGGCGCATGTGTGTGAGAGGGCATTGGCGGTGGAAACCCCTAACGACCCGGCGAAGGAGAGTTTGCAGGAGGAGAGCCAGCAGAAGATACAGACGGCGGAGGCGCGTGTGGCTCACGTGCAGAGTGAGCTTCGGCAGCTGATTCAGAAGGCCAACATTGCTTCATTTTCGTGCTGGATGAAGACATTGGGCAATGGGGAGGACAGGTTTCGGTTGATTCCGATTGGTAGGACCAGTGAGGAACCAGTGGATGAGAGGCAGGTTCAGGCTAGAAGGGGGAATGAGATCAAGAAGGTGATCAAGTCCCCTGAAGAGAGGAGGAAAGAAATCGAAGTTCGAGTTGCGGCTGCGAGGTTGTTGCAGCACAACAAGTCTGAGCCGCCGCCGCCGCAATCTCAGGATGATAGGGATGGAACTCATGAAAGGGCAGTGGATACATACTCTTCTGGTAATAGAAGAAAGTATGGACATGCTAGAAACAATGGGTCTTCGGCTGAGAGGGAGGGTTTGGTGCGCTCCTATTGGAATGGGATGAGTTTGGATATGAAGATGGGGTTGCTTAGGGTTAAAGTTTGTGATCTCAAGTCACACTTTGGGTCTTTGAAGGATCCTTTGCCAAAGGAGGTTTTGTCCGAGGCTTTGTCCTATGCTGAGGTTAATAGAACTTGGAAGTTCTGGCTTTGCTACTGTTGTGGGGAGAAGTTGCCGAGTGCAGAAGCTCATGGGCGGCACGTTGTGCAGGAACATATGGGGAATCTCGCCCCCAAAATGCAGAGGCTTTTGCCCCAAAATGTTGGTAGTGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTGTGGATGTGGCTGCAGCTATAGAAATGATTGTAAATAGAGAAAAATTCAGAGATTCTTCATCACATTATGATTCTTACTTGGGTCGTCCTAGAGACGGGTACATTGATTGTTTTGAAGACGCAAGTGACATTTACGATGATGAAGGAAGTACAAATTATAGTGTTCACAACTGTACAACAGAAAATACTGACTATTGTAAAAGTGAGGAAAATGATATTAGAGGTGGTGTTGAAGCCGAAGGGTCTATAACATGTAACTTCGCTGATAGTTGGCCTATATCCAATGACTCTGAACGTGCAAAACTGCTAGGGAAAATTCGTGCAGTATTTGAGGTGCTTATTAGGCACAAATGTCTTGCTGCTAATCATCTTAGCAAGGTCATACAATTTACGGTGGATGAGATACAGGGTCTTATTGGCGGTTCTCAACTCCTAAACTATGGTGTGGACCAAACACCTATGTGCATTTGTTTTCTGAGAGCGGCCCAGCTCAAGAAGATGCTCCAATTTTTACAGGAAGTATCTTATGCTTGTGGTTTGGGTATCTACACTGACAAAAGTAATAGTCCCATGGATGATTTGCACAATGCCAGTGAAGTTCCTGAGATCAAAGAGAAGATTGTTCTCAATGGAGATGCATCATGCCTCCTACTTGATGAGTGTTCACTACCAACACAAGTCACTCTTGGTAGAGCTCAGGGGATTGTATTGGATGACTCATCTGCCCCGACTTCTACTAATGGGGTTTCACACAATACCGATGCTTTGCTATCATGGATATTTTCAGGTTCACCTAGTGGGGATCAATTGATATCATGGATGCGCACAAGAGAAGATAGAAGCCATCACGGAATAGACATTGTCCAGATGCTCGACAAGGAGTTTTATCACCTACAGAGCCTCTGTGAGAAGAAGTATGATCGTTTAAGTTATAAGGAAGCTTTGCAAGAAGTAGAGGATCTTTGTCTTGAAGAAGGTAATAGGAGGGAGAATGTTGGTGGATTCGTCCAGCAAAGCTATGAGTCTGTCCTAAAAAAGAGGAGAGATGAGCTCATTGAGAGTGAGAATGAGGCGATGTATGTTAGCAATAGGTTTGAAGCAGATGCTATTGCAAGTGTTCTGCAAGAAGCAGAAGCAATTAAAGTTAATCGATTTGGGTATGAGGAAGCTTATGCTAATGTAACTTCTAATTTACGTGATTTGGAATCTGGTGAAGAAGATGAGTGGAGAACGAAAGAGTATTTGCATCGAATGGATAGCTGTGTAGAAATTGCTGTTCAGAAACTGAAGGAGCACTTATCTATAGAGCTTAGCAAAATTGATGCACGAATAATGAAAAAAGTTACAGAGATGCAGAAATTGGAACTCAAACTTGGGCCTATTTCTGCTTATGATTATCGAGTGATATTATTGCCTCTAGTGAAGTCATACCTAAGGGCTCTTTTGGAAGATTTGGCAGAGAAAGATGCGACAGAGAAATCTGATGCTGCAAGAGAAGCTTTTTTGGCTGAACTTGCTCTTGATTCTAAGAAGATTGTTAAAGGGGGAAGTGAGAACACAAGACATTTGGAGAAGACAAAAGACAGGAAGAAGAATAAAGATCATAGAAAAGCAAGAGATTTAAATGCTTCACGTGGTCATGAGCAGCTCTTGCTTCAAACTGCAATTCCTGATTCCTATCCAGTTTCATCTGATAGCAACTATCTAGACTCTGAGATGGTTGTTTCAATGAAAGGTGATGACTTGGATCCACAAGAAGAGGAATTTAGACGTAAAATTGAGCTCGAAAAGGAGGAAAAAAAACTTGAAGAAACTTTGGAATTTCAGCGGAGGATAGAAAATGAAGCTAAACAGAGGCACCTTGCTGGGCAACAAAAGAAATCATCTGGGACATATTTAGAGAAACTGGCAGACAGAACTCAAGATTATGAATTGAGGGCGGATGTTGATGTCCGAGGTGTAAATGAACACATAAGACCACCTATGCTGGTACAGTGCCCTAGCAATACGGATGGCGTGCTTATTACCAAAACAAATGGATCCATGGTACCAATTAAATCTTCACCTGATTTAGCTGCCCAAAAGAATCTTTGTATGCATCATTCAAAAGATAGGCAAGATTTGGCTAATGGAATAGTTACGGAGAATGGTCTTCGCTTTCCTGATCGTCCTGTAGGAAAAAATCATAGGCGACATAAGAATTCTTCTAGATTAGTAAATGGAAATTTGGAATCTATTGGAATGGAAAAAGAGAATGAGGTTACACATACTGACAATCACTTCAGAGAGAAGGCTAAAGTCCACAACAACCAAGACGCTAATAATGTTTCGGGAGACTATGGATCAAAGATGGTGAAAGTGGTGGAACTTAAAGATGATGAGGAGGAAAGATTCCAAGCTGATCTTAAATTAGCAGTACGCCAAAGTCTAGACACACATCAAGCACATAGGAAAGTGCCTTCAGTTTCCAGTTTGAACAAGCCTCAGAGTGCTTTAGAAGTGGATAGTGTGGGTTTTCCATTGGTGGAAGAAACAGCTGAGAATGTGAATGGAATTATTGGTACTGGGCTGAAGAATGAAGTAGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGCCGCTTTAGGAAGGAATTTCTTGGAAGATCAAGATCAGAGCATGATCATGTGGGCAATCCTTGTGTTATCTGTGCACTGTATGACATCTTTACTGCCATGGATGTTGCATCAAAGGATTCCAAGAGAGAAGCAGTAGCACCTACTTCCCTGAGGATAGCTCTAAACAATCTATATCCAGATAGTAACTTTTTCCAGGAGTCTCAGATGAATGATGCTTCTGAAGTACTGGCAGTGTTATTTGACTGCCTCCACCTAGCATTTACTTGTAGTTCAAGTGTTTCTGATATCGAATCAGTGGAAAGCAGCTGCATGGGATCTTGGGATTGTACAAACCGTAATTGTATAGTACATTCACTATTTGGAATGGATATTTTTGAACGAATGAATTGCTATCACTGTGGTCTTGAGTCCAGGCACTTGAAGTATACTTCCTTCTTTCACAATATAAATACCAATGCCCTTCGGACAATGAAGGTTATGTGTGCTGAAAGCTCCTTTGATGAGCTTTTGAATTTAGTGGAGATGAACGATCAGCTGGCTTGTGATCCAGAAGTTGGTGGTTGTGGCAAGCTCAACTACATTCATCACTTTCTTTCAACTCCACCACATGTTTTTATGACAGTTCTAGGTTGGCAAAATTCATGTGAGAGTGCTGATGATATAACAGCAACTGTTGAAGCCCTGAGCACTGAGATGGATATTAGTGTCCTTTATCGGGGTTTAGATCCTAAAAGCACCCATAGCTTGGTTTCCGTGGTTTGCTACTATGGGCAGCATTATCATTGCTTTGCATATAGCCATGACCATGAACAATGGATTATGTATGATGATAAGACTGTCAAGATAATTGGTGGATGGACTGATGTTCTTCAAATGTGTAAACGAGGGCATTTACAACCCCAGGTTCTGTTTTTTGAAGCTGTAAATTAG 4851 0.4368 MVNKKRNPRSKQPPPATTTDPNAVSDEAIRIVTSQSAAVPRSAIKAECERALTALRRGNNARALKLMKDCCSRHENSPHSAFLHRVHGTVCVKVAEVMDDPNAKQRYLKNAVDCGKKAVELSPNSIEFAHFYASSLYDTASDGGEYEEVAHVCERALAVETPNDPAKESLQEESQQKIQTAEARVAHVQSELRQLIQKANIASFSCWMKTLGNGEDRFRLIPIGRTSEEPVDERQVQARRGNEIKKVIKSPEERRKEIEVRVAAARLLQHNKSEPPPPQSQDDRDGTHERAVDTYSSGNRRKYGHARNNGSSAEREGLVRSYWNGMSLDMKMGLLRVKVCDLKSHFGSLKDPLPKEVLSEALSYAEVNRTWKFWLCYCCGEKLPSAEAHGRHVVQEHMGNLAPKMQRLLPQNVGSEWIEMILNCSWKPVDVAAAIEMIVNREKFRDSSSHYDSYLGRPRDGYIDCFEDASDIYDDEGSTNYSVHNCTTENTDYCKSEENDIRGGVEAEGSITCNFADSWPISNDSERAKLLGKIRAVFEVLIRHKCLAANHLSKVIQFTVDEIQGLIGGSQLLNYGVDQTPMCICFLRAAQLKKMLQFLQEVSYACGLGIYTDKSNSPMDDLHNASEVPEIKEKIVLNGDASCLLLDECSLPTQVTLGRAQGIVLDDSSAPTSTNGVSHNTDALLSWIFSGSPSGDQLISWMRTREDRSHHGIDIVQMLDKEFYHLQSLCEKKYDRLSYKEALQEVEDLCLEEGNRRENVGGFVQQSYESVLKKRRDELIESENEAMYVSNRFEADAIASVLQEAEAIKVNRFGYEEAYANVTSNLRDLESGEEDEWRTKEYLHRMDSCVEIAVQKLKEHLSIELSKIDARIMKKVTEMQKLELKLGPISAYDYRVILLPLVKSYLRALLEDLAEKDATEKSDAAREAFLAELALDSKKIVKGGSENTRHLEKTKDRKKNKDHRKARDLNASRGHEQLLLQTAIPDSYPVSSDSNYLDSEMVVSMKGDDLDPQEEEFRRKIELEKEEKKLEETLEFQRRIENEAKQRHLAGQQKKSSGTYLEKLADRTQDYELRADVDVRGVNEHIRPPMLVQCPSNTDGVLITKTNGSMVPIKSSPDLAAQKNLCMHHSKDRQDLANGIVTENGLRFPDRPVGKNHRRHKNSSRLVNGNLESIGMEKENEVTHTDNHFREKAKVHNNQDANNVSGDYGSKMVKVVELKDDEEERFQADLKLAVRQSLDTHQAHRKVPSVSSLNKPQSALEVDSVGFPLVEETAENVNGIIGTGLKNEVGEYNCFLNVIIQSLWHLSRFRKEFLGRSRSEHDHVGNPCVICALYDIFTAMDVASKDSKREAVAPTSLRIALNNLYPDSNFFQESQMNDASEVLAVLFDCLHLAFTCSSSVSDIESVESSCMGSWDCTNRNCIVHSLFGMDIFERMNCYHCGLESRHLKYTSFFHNINTNALRTMKVMCAESSFDELLNLVEMNDQLACDPEVGGCGKLNYIHHFLSTPPHVFMTVLGWQNSCESADDITATVEALSTEMDISVLYRGLDPKSTHSLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKIIGGWTDVLQMCKRGHLQPQVLFFEAVN* 1617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5586 1616 MobiDBLite consensus disorder prediction 267 314 - -
Lja1g5586 1616 MobiDBLite consensus disorder prediction 944 974 - -
Lja1g5586 1616 SUPERFAMILY Cysteine proteinases 1283 1613 IPR038765 -
Lja1g5586 1616 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1283 1615 IPR028889 -
Lja1g5586 1616 Gene3D Cysteine proteinases 1271 1614 - -
Lja1g5586 1616 Pfam Protein of unknown function (DUF629) 319 852 IPR006865 -
Lja1g5586 1616 Pfam Protein of unknown function (DUF627) 50 160 IPR006866 -
Lja1g5586 1616 Coils Coil 1013 1047 - -
Lja1g5586 1616 Coils Coil 171 198 - -
Lja1g5586 1616 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g5586 1616 PANTHER UBIQUITIN SPECIFIC PROTEINASE 32 1616 - -
Lja1g5586 1616 CDD Peptidase_C19 1374 1613 - -
Lja1g5586 1616 Gene3D Tetratricopeptide repeat domain 25 199 IPR011990 GO:0005515
Lja1g5586 1616 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 32 1616 - -
Lja1g5586 1616 MobiDBLite consensus disorder prediction 277 296 - -
Lja1g5586 1616 MobiDBLite consensus disorder prediction 10 24 - -
Lja1g5586 1616 Pfam Ubiquitin carboxyl-terminal hydrolase 1284 1598 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5586 Lja-Chr1 97805646 97816340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5586 37 1613 C2H2 Transcription Factor Family AT3G47890 53.088 0.0 1593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5586 - - lja:Lj1g3v0449000.1 2553.47