Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5571 ATGGAAGAAGATCAAGAATGGAAGCACGTTTGCAAATTCTGCAGCAAGAGGTTCCCTTGTGGGAGATCGTTAGGGGGTCACATGAGGTCCCATTTCACCAATGGTGATTCATCAATTGATCAGAAGGAGAACAAGAAGAAGAACAAGAACCCTTCTTCATTGGCTAGTTCTGAAACTGGGTATGGTCTCAGACAGAATCCAAAAAGGACTTGGAGACTCAACGATTGGAATGATGATGAAGAAGAAGAAGAAGCAGCTATGGTGTTTGAAAATGTCTGCAAAGAGTGTGGTAAAGGGTTTCACTCTTTGAAAGCTTTGTTTGGTCACATGAAGTGTCATTCAGAGAAAGTGAGAGTGTTGAAGTTGATCAATCACAGTTTTCATGATCAAGATTCATGGAACAACAATGTGGGTCGGAATCGGAATCAGAAGGTGGTGATGGATAGCCAATCGGATAGTGAAGCTGCTACCATTGCTCCAAATCGGAGGAAAAGATCCAAGAGAATAAGAACAAGGTATGTGATGAGTGGCAAAGTTGCTTCTTCTTCTTCTTCTCTGTCTTTTGCTGCATACCCTTGTTCCTCCTCTGTTTCTGAGGCAGAGTTAGAGCAATATGAGGTTGCTATAAGCTTGATGATGCTTAGTAGGGATGTGAATCCTTGGTGGGGTGGTCTCAATTCTGTTGCTGAGTCTTCTGAGAATAATAACTCACTGCATTTGGAATTGGAAGCACCATTTTCAGTTCCAATTTCTAAGGTTGAGGGCAAGAGGCTTATGAATTCTGTTTCTTCTAATCTGAACCCCAAAGGGGGGAAAGGTTCAGAAATTTTGGTAGCTGAGAGTCTTGAAAATGGATCCAGGATGGACAAAACCAGAGTTTGTGTAAATGGGGTTGTCAAGAATGTAAAGGATGAGAAGCCAGAGTTTGCATTTGAGGTCAATGATAAGTACACTAGTTCAATGAAGGCAAAGTTGAAGAGTTTGGTGAACAAGGGTTCAGAAGGTGAATTGAGCTGCAAGAACACTCATAAGAGAGGCAAGTTTGAGTGCACTACTTGCAACAAGATCTTCCACTCTTACCAAGCTCTTGGAGGTCACAGAGCTAGTCATAAGAGGATCAAAGGCTGCTTTGCTTCCAAAGCTGAGAGCAGTGAGAACAACAGCATTGAATTGGAAGCTGCAGAAGCAGAACTCTACCCTGATCCTGATCTAACAACAGAAAGTAAGCTCATGATGAAGAAACATGAACTAGGTGCTGGTTTTGGTGATGAGACCATGAAGAGCAAAGAGCATGAGTGCCCAATTCGCGTCAAGGTTTTTCAATCTGATCAAGCCTTGGGTAGACACAAGAGATCTCATTTGGCTGGTGAGTCTGAGAGTAGTACTAGTCACAGTGAAACAGTTTCTGAAATAGGGGACTTCCTTGATCTCAATCTTCCTGCTGCTACAGAAGAAGGAAGCAATAGCCATGCACCAGGAGCGGATGGACTGCCTGCTCTCTTTTACCATAAATTTTGGCATGTCATTGGTGATGATGTAGCTGAGTTTTGTCTACAAGTTCTGAGTGGAGCTACATCTCCAGATGATAGTGTGCTATTCGCACGAGAGATAGTGGAAGAGGCCCAGTGTTTGAAGAACATCCTAGCCACCTTTGAGCGAGCTTCAGGTCAACGAATCAATTTTGACAAGTCTATGCTTTCAATGAGCCGAAATGTGCCCGATATTCATTTCAATGAACTTAAGCAGCTATTGCAAGTAAAGGCGGTTGAAAGCTATGACAGATACTTGGGTTTACCAACTATCATTGGTAAGTCTAAAACTCAAGTGTTCAATTTTGTCAAAGATCGAGTCTGGAAAAAGCTTAAAGGGTGGAAGGAAAAATTCCTTTCGAGGGCAGGCAGGGAGGTTCTTATTAAATCTGTGGTTCAGGCCATACCCTCCTATGTTATGTCTTGTTTTATTTTACCTGATGGTTTGTGTGCAGATATTGATCACATGATAGCTAGATTTTACTGGGGAGGTGACCCAAATAAACGTGGTCTTCATTGGACAAAATGGGAGAATCTTTGTAAGAGGAAGGAAGATGGTGGCCTTGGTTTTGGTGACTTCAAATATTTCAATATGGCCTTAGTGGGAAAGAATTGGTGGCGCATTTTTACTCGCCCTGAGTGTCTGTTATCACGAGTTTTTAAAGCGGTTTATATTCACAATTGCAACATGCGTGAGGCCAAGAAAGGGTATCGTCCAAGCTATGCATGGACAAGTATCCTAAAAACGAGTTGGATATTTGAGAGAGGGTGTTCTTGGAGAATTGGTGATGGAACTCAGGTTGATATTTGTAGGGATAAATGGGTGTCGGGAGATGCGCCTCTCATTTACCGACAAGATTTAGTGGAAGAATTTAATCTCACCAAGGTTGCAACGCTCATTGATCATGACTTGCACTGTTGGAGGAGAGATTTGATTGAGCTGGTTTTTAGCCCAAGCACTGCGGCCAACATTCTTTCCATTCCTTTGGGAGTGCATGGGGGCATTGACTTGTTTCATTGGCCAGGTACAAGTGATGGACAATATACATCAAAAGAGGGATATGACTTCATGCGGTTGTTGTTACACCGTGATCCTGCGTCCTCTTCCTCTACCGCTACACTTGAGCCAAGGAGCTGGAAGTTTTTCTGGGCATCTCGAGCTTTGCCTCGTTGCAAAGAAACCTGTTGGAGGGCAATTACTGGTTTGTTGCCCCTAAAGGAGAGTTTGTTCCGGCGCCACGTCGATGTCGATCCAGGTTGCGGTTTTTGTGCTTCCGAGAGGGAGAATGAAGACCATCTTTTCCTCCAGTGCCCAGCTGCCAAACACATCTGGTTTGCGTCTCAGCTAGCCATCAGAGCAGATTCTTTTACCTCGTTTCAAGCATTCTGGACAGCGGTGATAGCGATGGATGATGAAGAGGTTCTGGCCATGGTTCAGACGGTGGTATATGCGATTTGGGAGGCAAGGAACAAGGTCTGTTTTCAGCAGGGAGAGCTGGTGGTGGTTGCGGTTCTCCGCAGTGTGGCTAGTATGTTGGAGGAAGCTCAGGTTCGTGATCTTTCTTGTGCACCTTCGGTTTCGTTGCCAGCAAAATGGAGCAAGCCGGCGGTGGGTATCATCAAATGCAACCTTGATGCTTCTCTTCGTGTTGATGGAACGCGTGGCATGGGGATGGTGGCTCGCGATTGCCAAGGTGAGGTCATGGCGGCAACATGTTCCTTTCCTACCTCTTGTACTTCACCACTTGTGGCGGAGGCCATGAGTATGAGATGGACATTACAGTTGGCTATTGATCTAGGATTTCGCCGGATATGCTTGGAAACGGATTGTCTCCAATTATTCAATAGTTGGAAAGCAAAGGAAGCCGGGAGATCTTATTTGAGTTCGATTCTGCAGGATTGCTGTGTTTTAATTAATGCTTTTGATTTTGTTTCGCTTTCTTTTGTTAGACGCGCAGGTAATACTGTTGCGGATTTTTTGGCTAAGAACTCTGAGACCTATGCGAATATAGTATGGGTGGAGGAGGTTCCGGTAGCCATTTCTCATTTGGTTATTTCCGATGTAAGGACTCAATTGCCGGTTGGCCCTTAA 3621 0.4435 MEEDQEWKHVCKFCSKRFPCGRSLGGHMRSHFTNGDSSIDQKENKKKNKNPSSLASSETGYGLRQNPKRTWRLNDWNDDEEEEEAAMVFENVCKECGKGFHSLKALFGHMKCHSEKVRVLKLINHSFHDQDSWNNNVGRNRNQKVVMDSQSDSEAATIAPNRRKRSKRIRTRYVMSGKVASSSSSLSFAAYPCSSSVSEAELEQYEVAISLMMLSRDVNPWWGGLNSVAESSENNNSLHLELEAPFSVPISKVEGKRLMNSVSSNLNPKGGKGSEILVAESLENGSRMDKTRVCVNGVVKNVKDEKPEFAFEVNDKYTSSMKAKLKSLVNKGSEGELSCKNTHKRGKFECTTCNKIFHSYQALGGHRASHKRIKGCFASKAESSENNSIELEAAEAELYPDPDLTTESKLMMKKHELGAGFGDETMKSKEHECPIRVKVFQSDQALGRHKRSHLAGESESSTSHSETVSEIGDFLDLNLPAATEEGSNSHAPGADGLPALFYHKFWHVIGDDVAEFCLQVLSGATSPDDSVLFAREIVEEAQCLKNILATFERASGQRINFDKSMLSMSRNVPDIHFNELKQLLQVKAVESYDRYLGLPTIIGKSKTQVFNFVKDRVWKKLKGWKEKFLSRAGREVLIKSVVQAIPSYVMSCFILPDGLCADIDHMIARFYWGGDPNKRGLHWTKWENLCKRKEDGGLGFGDFKYFNMALVGKNWWRIFTRPECLLSRVFKAVYIHNCNMREAKKGYRPSYAWTSILKTSWIFERGCSWRIGDGTQVDICRDKWVSGDAPLIYRQDLVEEFNLTKVATLIDHDLHCWRRDLIELVFSPSTAANILSIPLGVHGGIDLFHWPGTSDGQYTSKEGYDFMRLLLHRDPASSSSTATLEPRSWKFFWASRALPRCKETCWRAITGLLPLKESLFRRHVDVDPGCGFCASERENEDHLFLQCPAAKHIWFASQLAIRADSFTSFQAFWTAVIAMDDEEVLAMVQTVVYAIWEARNKVCFQQGELVVVAVLRSVASMLEEAQVRDLSCAPSVSLPAKWSKPAVGIIKCNLDASLRVDGTRGMGMVARDCQGEVMAATCSFPTSCTSPLVAEAMSMRWTLQLAIDLGFRRICLETDCLQLFNSWKAKEAGRSYLSSILQDCCVLINAFDFVSLSFVRRAGNTVADFLAKNSETYANIVWVEEVPVAISHLVISDVRTQLPVGP* 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5571 1206 Pfam zinc-binding in reverse transcriptase 885 954 IPR026960 -
Lja1g5571 1206 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Lja1g5571 1206 Gene3D - 1048 1175 IPR036397 GO:0003676
Lja1g5571 1206 Pfam Reverse transcriptase-like 1055 1173 IPR002156 GO:0003676|GO:0004523
Lja1g5571 1206 Pfam C2H2-type zinc finger 431 455 - -
Lja1g5571 1206 Pfam C2H2-type zinc finger 9 31 - -
Lja1g5571 1206 Pfam C2H2-type zinc finger 92 115 - -
Lja1g5571 1206 Pfam C2H2-type zinc finger 348 372 - -
Lja1g5571 1206 Gene3D Classic Zinc Finger 345 453 - -
Lja1g5571 1206 SUPERFAMILY beta-beta-alpha zinc fingers 92 370 IPR036236 -
Lja1g5571 1206 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Lja1g5571 1206 Gene3D Classic Zinc Finger 6 113 - -
Lja1g5571 1206 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 491 - -
Lja1g5571 1206 CDD RNase_H_like 1052 1172 IPR044730 -
Lja1g5571 1206 MobiDBLite consensus disorder prediction 448 468 - -
Lja1g5571 1206 MobiDBLite consensus disorder prediction 31 65 - -
Lja1g5571 1206 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 491 - -
Lja1g5571 1206 ProSiteProfiles Zinc finger C2H2 type domain profile. 348 375 IPR013087 -
Lja1g5571 1206 SMART c2h2final6 91 113 IPR013087 -
Lja1g5571 1206 SMART c2h2final6 9 31 IPR013087 -
Lja1g5571 1206 SMART c2h2final6 431 453 IPR013087 -
Lja1g5571 1206 SMART c2h2final6 348 370 IPR013087 -
Lja1g5571 1206 ProSitePatterns Zinc finger C2H2 type domain signature. 350 370 IPR013087 -
Lja1g5571 1206 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Lja1g5571 1206 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 31 IPR013087 -
Lja1g5571 1206 SUPERFAMILY Ribonuclease H-like 1050 1173 IPR012337 -
Lja1g5571 1206 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5571 Lja-Chr1 97085928 97095501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5571 1 235 C2H2 Transcription Factor Family AT1G26610 40.167 8.11e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5571 - - lja:Lj0g3v0305129.1 932.554