Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5568 ATGGCTTCTGGTTCATCACATGTGACTCCAGTGGCGTCTGCAAGTTTGCCTTATGCATGGAATGGCGCATGGTCACATCAAGTTTTCACTAATGATGCCACGGTTGTGTTGCCTCATAAAACCAAAGTCACCAAAGCAATGCAATGTGAAGTTTGTAAAATTGATTGCAATACTGCAGATGTTTATGAAAAACACATATTGGGAAAGAAACACAAAAAAAATTTGCAGGTATGGAATAATCCCACTACTGCATTATTACCGGGACCCTCTCATGCAAATGTGCAAAGTTCGACAAGTGGTATCCAAGGACAAGTTCAAGTTGGGGCTGAAGGTGAGGAATTAGAATCTAAGAAACGGAAGGATTTGAGTGGTGGAACACCCATGGACTCCGTAAAGATTTGCACGGTGTGCAACGTTATGTGCAACAGTGAAGACACGTATAGCAAGCATCTAGCTGGGAAAAGGCATACGGCTCAGGTTGGCTTGATGAATAATAATGGGATTGGTCCTTCTGTTGCTGCATTCAAGCGTCGAAAAGCTCCAAAGAAAATACAGGTTGCTCAATCAGCATGGTGTGAAGTTTGTAAGATTACTTGTGACACCAAGGATATGTATATTATCCACTTATCTGGGAAGAAACACCTGAAAAACTTGGAGAAACTGTCAAAACCAGAAACTGGTGTCGGTGCCAGTGCCGCACCTGCAAATCCAATAATCGGGCCACTGGAAAAGCCAGGTTCTGATAAACCAAGAAAGGCACCAGAAATGGATATTGAGACAAAGAAACGTAAAATTGTTGAAGGAGGGGCTGCAGAAGCTGCTGTTAGATTGTGCGATCTATGCAACGTGGTGTGCAACAGCGAGAAAGTTTTCAATACTCACCTTGTTGGACATAAACACGCTGCTATGGTGAAGAAGAAGCAGGCAGAGTCAAGCACTAGCTGA 945 0.4328 MASGSSHVTPVASASLPYAWNGAWSHQVFTNDATVVLPHKTKVTKAMQCEVCKIDCNTADVYEKHILGKKHKKNLQVWNNPTTALLPGPSHANVQSSTSGIQGQVQVGAEGEELESKKRKDLSGGTPMDSVKICTVCNVMCNSEDTYSKHLAGKRHTAQVGLMNNNGIGPSVAAFKRRKAPKKIQVAQSAWCEVCKITCDTKDMYIIHLSGKKHLKNLEKLSKPETGVGASAAPANPIIGPLEKPGSDKPRKAPEMDIETKKRKIVEGGAAEAAVRLCDLCNVVCNSEKVFNTHLVGHKHAAMVKKKQAESSTS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5568 314 Gene3D Classic Zinc Finger 178 226 - -
Lja1g5568 314 SUPERFAMILY beta-beta-alpha zinc fingers 24 78 IPR036236 -
Lja1g5568 314 PANTHER - 23 158 - -
Lja1g5568 314 MobiDBLite consensus disorder prediction 226 257 - -
Lja1g5568 314 MobiDBLite consensus disorder prediction 88 124 - -
Lja1g5568 314 Gene3D Classic Zinc Finger 32 77 - -
Lja1g5568 314 Gene3D Classic Zinc Finger 110 162 - -
Lja1g5568 314 Gene3D Classic Zinc Finger 253 309 - -
Lja1g5568 314 PANTHER ZINC FINGER RNA-BINDING PROTEIN 177 309 - -
Lja1g5568 314 PANTHER ZINC FINGER RNA-BINDING PROTEIN 23 158 - -
Lja1g5568 314 SUPERFAMILY beta-beta-alpha zinc fingers 276 309 IPR036236 -
Lja1g5568 314 MobiDBLite consensus disorder prediction 88 105 - -
Lja1g5568 314 Pfam Zinc-finger of C2H2 type 133 156 - -
Lja1g5568 314 Pfam Zinc-finger of C2H2 type 191 214 - -
Lja1g5568 314 Pfam Zinc-finger of C2H2 type 48 71 - -
Lja1g5568 314 Pfam Zinc-finger of C2H2 type 278 300 - -
Lja1g5568 314 SMART ZnF_U1_5 273 307 IPR003604 GO:0003676|GO:0008270
Lja1g5568 314 SMART ZnF_U1_5 129 163 IPR003604 GO:0003676|GO:0008270
Lja1g5568 314 SMART ZnF_U1_5 187 221 IPR003604 GO:0003676|GO:0008270
Lja1g5568 314 SMART ZnF_U1_5 44 78 IPR003604 GO:0003676|GO:0008270
Lja1g5568 314 SUPERFAMILY beta-beta-alpha zinc fingers 123 160 IPR036236 -
Lja1g5568 314 SUPERFAMILY beta-beta-alpha zinc fingers 188 221 IPR036236 -
Lja1g5568 314 SMART c2h2final6 190 214 IPR013087 -
Lja1g5568 314 SMART c2h2final6 276 298 IPR013087 -
Lja1g5568 314 SMART c2h2final6 132 156 IPR013087 -
Lja1g5568 314 SMART c2h2final6 47 71 IPR013087 -
Lja1g5568 314 PANTHER - 177 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5568 Lja-Chr1 97000800 97005831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5568 123 309 C2H2 Transcription Factor Family AT5G61190 32.620 7.44e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5568 - - aprc:113848135 436.802