Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5564 ATGGTGGAACTCACAGAAGAACAGCGAAAACGAGCGGAAGCCAACCGCGCCGCCGCCATCGCAAAACGCAAAGCCTTCTTAGAATCCTCCAACAACCACCACGCCCCACCACAACGAGACCCATGGCACCTTTTCAAATGCCAGAAATTCTCCCACCCCCAACCACAACCACCACCACCACCACAACTTCCTCCTCCCAAATTCCTCGCCTCCCTCGAAATTTGCGCCCCCGATTCCTTCTCCGTCACCCCTCACCCTCTCCCCGATTTCCCCTTCCCTCCGCCGCACACTTGCTTCCAGATTCTCAACTCCATTCTCTCTCAGGCCTGCGTCTTCAAGCTGGTGGACTACGCCGCGGTATTGAAGCGGCTCAAGGCCGCGCCGGAGGTCCAGGTTGAGGAAATTCCGTGGGGGACGTTAAATGTGGTTGAGAGGCTGTCACATTCGTTCGCGGCGGGGCGGTGGATGCCGGTGAGGCCTGAGCACCTGAGTGATGAGGAGGTTGATTGTCTTATCGAGAAGCTGCCGGGGACTATTCGCCGTGCCTTGCTCCCTTTCCAGATGGATGGTTTGAGGTTTGCCCTCAGAAGAGGTGGCCGATGCCTCATCGCGGACGACATGGGCCTAGGGAAAACCCTTCAGGCTATTGCTATTGCAGGATGTTTCAGGGATGAAGGGCCTATACTTGTTGTTTGCCCTGCAGTTTTGCGGTATTCGTGGGCGGAAGAGTTGGAGCGTTGGCTTCCTTTATTCTTGCCTGCTGATATTCATCTCGTTTTTGGCCATCAAGACAATCCTGTACATTTAAAAAGATGTCCTAGAGTAGTGGTTATTTCTTATACCATGCTCCATCGTCTAAGGAAGAGCATGCTTGAGCGTGAGTGGGCTCTTTTAATTGTTGATGAATCCCATCATGTGCGATGTACACAGAAAGCCTCAGAACCAGAAGAGATAAAGGCTGTTCTTGATGTGGCTTCGAAAGTCAGGCGTATAATTCTGCTATCAGGGACACCTTCTTTGTCAAGGCCATATGACATATATCATCAGATAAATATGTTATGGCCAGGTTTGCTGGGGAAGAATAAATATGAGTTTGCAAAAACTTATTGTGATTTGAAATATATGAAGGGCGTGCAAGGAAAATATTTTGCGAACTATTCAAAAGGAGTTCGCTTGGAGGAGTTGAATGTATTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAGCATGTGATGCTACAGTTACCTCCAAAACGACGGCAAATTATAAGACTGTTGTTGAAGAGATCTGATCTAGTTGCTGCAAAAACTGCAGTTGGGCCATTGAAAATTGATGCATCTGAAAATGCAAATGAAGACATGCCTTTGGAAAATTTCGATGAACCTGATGGAAAGCTCTCTTATCAAGAACTTGGAATTGCAAAGCTTTCTGGGTTTTGTGAATGGCTTTCCCTCCATCCACTTATTGAAGGATCAGAGAATGCTTCAAAGATGTTAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTTCAGGAGTTTATATGTGAGAAAGGAATAAGTTTTGTGCGAATTGATGGAAATACTCTTGCTAGAGACCGACAATCAGCAGTTGTCTCATTTCGTTCATCACCAGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAATAGCACAAGATGTTGTGTTCTTGGAGCTGCCTCAGTGCCCAACTGTGATGCTTCAGGCTGAGGATAGAGCTCATCGACGAGGACAAACAAATGCAGTTAATGTATACATATTTTGTGCTAAGGATACTTTGGATGAATCACATTGGAAAAATTTGAACAAAAGTTTACATCGTGTTTCATGTACAACAGATGGCAAATATGATGCAATGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGACCCATCTTTGAAAACTGAAAGTCTTGAAAAGAAATCGACTTTCAAAGATGCATCAAGTGAAATACAAGTGGATAAGCACCCTTCCGCAGTAAATTCAAATGAATCAGAAGCAAGTCAAGATGATAAATCTGATGAGCCGGCGTCTTTTGAAAATAACACAATTCAGGGTGCTAATATTATGGATGAAAATGTTCCCTGCCTAGATTTAGGCAAGGATTCAGTTTTGGATGGCAATCTTGATGTAGATGTTTCTTACACTGTGGAGAGATGTTCTAAAAAGTGTTTGAAAGACGATAAAGTAATTGAGGATAAAAAATCAATTTCAACAACAGATGCAGATGACAACCAGCCTGTTCTTTCAGTTGGAGCTGATGGACATTTCTCTAGTCAAGCTGATTCTCTGAGATTTGAGGTGAGCCCATACACTGGAAGGGTCCACTTGTATGCTTGTGTTTTGGGTACAGACACAAGACCACAGCCACTTTATGAAAATTTCCGACCAGAGGAACTTGAGTTGCTAAGTTCTGCTGCTGTTGATGAGAAACAGAGTGTAGAGTCTCTGTCTGTCAAGGATAACCCTGCTTATAGGCATGCACTTCTGGATTTTGCTAATGAATGGAAGAACTTGAGGTCAATTGAGCGCAAGAAGTTACATGGAAAACCATTACAACTTCCTTTAGCTGTTGAATTGTGCTATTTGAGTGAAAGCAATAACCACAACAAGAAGGGATTATTAAATGGTGGAAGTAGACGTCGCAAGACACCTTTAATGGAGGTTAGCTATCCTTTACCATCAGGTGCTATTTGGAAAAAAATTAATCTCCGATGGGGCCTCGGTAAGAAGGAAAAAGAATACTCTCAAGCCTGGAGTCTGGAAGATGAGCCACTCTGTAAGCTTTGTCAGAAGCAGTGCATGGGTGACAATGCCAAGACACCTGAATTTTTTGAAGATCTTTTTTGTAACCTTGCCTGTTATGAAGAGTATCGCATGAGAACTAGCAACAGATTCCTTCGTCAGGAACTGTTCCAAATTGAACAAGGCGTATGTACAAATTGCCTATTGGATTGTCATAAGCTAGTTGTGCATATAAGACCTTTGTCAATGAAAAGACGGCGGGAGTATATCGAGAAAGTGGCTCCAAAAATTGCGAAGCGGGAGAAGATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCATGCTGATCATATTATTCCAGTATATCAAGGCGGAGGTGAATGCAAACTGGAAAATATGAGAACTCTGTGTGTGGCCTGCCATTATGATGTTACTGCTGCACAGTGTGCTGAACGACGTTCAATAAGAGCAAATGCCAGGAAACAACTAAAAATGTTATTGAATAGCATGGAAAATGGTATGCAGGGTGCTGGTGGCACTAATATTAAGGACCACACGCCTCTCGAGGTACACGGGAGCACGCCTGAGGATGAGCTTTTAGTCATTGTTCCTGGAAGTGCCTACTCTCTAGCTGACAGCTAA 3450 0.438 MVELTEEQRKRAEANRAAAIAKRKAFLESSNNHHAPPQRDPWHLFKCQKFSHPQPQPPPPPQLPPPKFLASLEICAPDSFSVTPHPLPDFPFPPPHTCFQILNSILSQACVFKLVDYAAVLKRLKAAPEVQVEEIPWGTLNVVERLSHSFAAGRWMPVRPEHLSDEEVDCLIEKLPGTIRRALLPFQMDGLRFALRRGGRCLIADDMGLGKTLQAIAIAGCFRDEGPILVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPRVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSRPYDIYHQINMLWPGLLGKNKYEFAKTYCDLKYMKGVQGKYFANYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLLKRSDLVAAKTAVGPLKIDASENANEDMPLENFDEPDGKLSYQELGIAKLSGFCEWLSLHPLIEGSENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSCTTDGKYDAMKEIEVEGISYLDPSLKTESLEKKSTFKDASSEIQVDKHPSAVNSNESEASQDDKSDEPASFENNTIQGANIMDENVPCLDLGKDSVLDGNLDVDVSYTVERCSKKCLKDDKVIEDKKSISTTDADDNQPVLSVGADGHFSSQADSLRFEVSPYTGRVHLYACVLGTDTRPQPLYENFRPEELELLSSAAVDEKQSVESLSVKDNPAYRHALLDFANEWKNLRSIERKKLHGKPLQLPLAVELCYLSESNNHNKKGLLNGGSRRRKTPLMEVSYPLPSGAIWKKINLRWGLGKKEKEYSQAWSLEDEPLCKLCQKQCMGDNAKTPEFFEDLFCNLACYEEYRMRTSNRFLRQELFQIEQGVCTNCLLDCHKLVVHIRPLSMKRRREYIEKVAPKIAKREKMLEKLVNDPTEGNAWHADHIIPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRSIRANARKQLKMLLNSMENGMQGAGGTNIKDHTPLEVHGSTPEDELLVIVPGSAYSLADS* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5564 1149 SMART helicmild6 510 593 IPR001650 -
Lja1g5564 1149 Gene3D - 160 404 IPR038718 -
Lja1g5564 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 407 IPR027417 -
Lja1g5564 1149 CDD HNHc 1041 1081 IPR003615 -
Lja1g5564 1149 Pfam Helicase conserved C-terminal domain 488 593 IPR001650 -
Lja1g5564 1149 Gene3D - 483 690 IPR027417 -
Lja1g5564 1149 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 356 IPR014001 -
Lja1g5564 1149 MobiDBLite consensus disorder prediction 25 65 - -
Lja1g5564 1149 Pfam HNH endonuclease 1047 1078 IPR002711 GO:0003676|GO:0004519
Lja1g5564 1149 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1102 - -
Lja1g5564 1149 Coils Coil 2 24 - -
Lja1g5564 1149 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 485 639 IPR001650 -
Lja1g5564 1149 SMART ultradead3 179 365 IPR014001 -
Lja1g5564 1149 Pfam SNF2-related domain 201 444 IPR000330 GO:0005524|GO:0140658
Lja1g5564 1149 CDD SF2_C_SNF 475 604 - -
Lja1g5564 1149 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 5 1102 - -
Lja1g5564 1149 CDD DEXHc_HARP_SMARCAL1 183 407 - -
Lja1g5564 1149 Gene3D - 971 1104 - -
Lja1g5564 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 645 IPR027417 -
Lja1g5564 1149 MobiDBLite consensus disorder prediction 657 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5564 Lja-Chr1 96958992 96976132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5564 498 611 RAD5 or RAD16-like Gene Family AT1G11100 37.719 6.26e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g5564 SNF2_N 1.9e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5564 K25861 - gmx:100788690 1746.87