Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5560 ATGGAGTTATATGACCATGATTTCTTAGAGGAAGAGCTACTGGCTCTACAGAAAGAAACACGGAACAATACTAATCCAAGTTCAGAAAAAAACCAGCTTTTCTCCAATGATTGGAGTTTTGATCACTGTTATGATCAAAACTCTTATTCTTTTATTCCAAACCACTCTTCCCTTTGCCAACAAGTTCCTCAAAGTTACTACAATAATAGTAGCAGCTACACCTTCAATGAAATCTACAGTTCCTTACTTGATGAATTCTCTGCACCCCAGATCATGGATTCATCATCCTATAACACCCTCCTTGAGACTCCACTCAACACTCAACCATTTCTGGCTCAAGAAGATTACCCTTTGTCAGTGATGGAAGATGAGGATCTGGATTTGGAAACAACATGCAAAATGGAGCCAAACCAATTCCCTGAAGCAATACCTGTATTCAACACTGGTACTTGTTTGGAAATAAAGAATAGAGCAAAGAAGCTTGAGGGGCAGCCCTCCAAGAATCTAATGGCTGAGAGGAGAAGGAGAAAGAGGTTAAATGATAGGCTTTCCATGCTGAGATCAATTGTCCCCAAGATAAGTAAGATGGACAGAACAGCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATTAACAATTTGAAACAAGAAGTAGAAGTAGATTCAGACATGACTAACATCTTCAAGGATGCAAAGCTCAATGAAATCTTAGTGAGAAATTCTCCCAAGTTTGATGTGGACAGGAGGAATATCAACACAAGGGTTGAGATCTCCTGTGCAGGGAAGCCAGGCTTGTTGCTTTCTACAGTGAACACCTTGGAAGCATTAGGCCTTGATATTCAACCATGCGTTATTAGCAGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTTGAGCAGAAAACAATTCTGAGTTCTGAAGATATCAAGCAAGCTCTATTTAGAAATGCAGGATATGGAGGTCAATGTTTGTGA 999 0.3954 MELYDHDFLEEELLALQKETRNNTNPSSEKNQLFSNDWSFDHCYDQNSYSFIPNHSSLCQQVPQSYYNNSSSYTFNEIYSSLLDEFSAPQIMDSSSYNTLLETPLNTQPFLAQEDYPLSVMEDEDLDLETTCKMEPNQFPEAIPVFNTGTCLEIKNRAKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINNLKQEVEVDSDMTNIFKDAKLNEILVRNSPKFDVDRRNINTRVEISCAGKPGLLLSTVNTLEALGLDIQPCVISSFNDFTMQASCSEEFEQKTILSSEDIKQALFRNAGYGGQCL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5560 332 SMART finulus 169 218 IPR011598 GO:0046983
Lja1g5560 332 PANTHER DNA BINDING PROTEIN 3 332 - -
Lja1g5560 332 CDD ACT_UUR-ACR-like 258 299 - -
Lja1g5560 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 332 - -
Lja1g5560 332 Gene3D - 171 245 IPR036638 GO:0046983
Lja1g5560 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
Lja1g5560 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Lja1g5560 332 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Lja1g5560 332 Coils Coil 202 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5560 Lja-Chr1 96692930 96695132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5560 155 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.641 3.13e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g5560 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5560 - - gmx:100814388 474.937