Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5558 ATGCTGCCTTCTCTAATTAGGTCTATCTATGATGAGGTTGCTGAGCTGATATGGGAAAATGGGCAACTATCGATGCATGGGCTTGGTGGGCTTCATCCCACTTCTGAGGAAAAACCCACATTATTGATTAAGGCCCGTGATACATTAGAGTCTGTGGTTCAACAAGCAACTACCTTGCAACATCAAAAGTCAAAACAACACATATTGGAAGACCATGCCCCTACTAGTGTAAACTCCATTATTGGTACTGCATCCTCCAGTGAGATTCCAATATTGACAAAGAAGCGAGCAAGGTCAGACACTGATTACTGCGGAAGAAATTTCAGCACCGCCACTAACATGTTAGAAGAATTTTGTGGCGGCCTCCCCAGTGGTGGTGCTAGTGGTTGTGCTAGTGCTAGTGGTGGTGCCTCTCTCTGTAGGGACAATACTGACACTACAACCATGATGACTTGGGCTTCTCTTGAATCAGATCATTCTTTCAAGAAGAAAAGTCATGAGAAGCATTCGGCTTGTCACTTTGGATCGGATGTCCTTGAACAAGATGACAGAGACAGCAAAGCAGAAACATGCCAAACCAACACAAAAAGGCGAAATCGAACTGCTGCCACTCAACCAATCAGAGCGGATAGAATTAATCAGAGGTTGAAAGCCTTGCAGAAGTTGGTCCCCAATGCAAGTAAGACTGATAAGGCATCAATGTTAGATGAGGTGATTAACTACTTAAAACAGCTTCAAGCACAAATCCAAATAATGAATATGACAAATCTGCCCCAGATGATGGTGCCTTTAGCAATGCAGCAACAGCTTCAAATGTCAATGCAGCTAGCCAGAATAGGTGCTATGGGAATGGTTAACATGAACCACTTAGTTCGACCAACATCAATTATGATGCCAGCTTCTTTGGTTCAACCTCGTGCCCCTGCATCTTCAAACCCTGAGCCTTCATCTTCAGGCATCAATGCCTCAATTCCTTTGCCCAATCCATATTGCGCAAATTTGACACAATTGGTTAATATGGAAATCCTCAACAACATGTCAGGTCTTTACCGGCAACAGATGAGTCAGAAGACTCAGAACAATCAAAGCCTTGAGCAGCAACTTGACACAAATGCACCATGA 1122 0.4367 MLPSLIRSIYDEVAELIWENGQLSMHGLGGLHPTSEEKPTLLIKARDTLESVVQQATTLQHQKSKQHILEDHAPTSVNSIIGTASSSEIPILTKKRARSDTDYCGRNFSTATNMLEEFCGGLPSGGASGCASASGGASLCRDNTDTTTMMTWASLESDHSFKKKSHEKHSACHFGSDVLEQDDRDSKAETCQTNTKRRNRTAATQPIRADRINQRLKALQKLVPNASKTDKASMLDEVINYLKQLQAQIQIMNMTNLPQMMVPLAMQQQLQMSMQLARIGAMGMVNMNHLVRPTSIMMPASLVQPRAPASSNPEPSSSGINASIPLPNPYCANLTQLVNMEILNNMSGLYRQQMSQKTQNNQSLEQQLDTNAP* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5558 373 Gene3D - 192 256 IPR036638 GO:0046983
Lja1g5558 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Lja1g5558 373 SMART finulus 202 251 IPR011598 GO:0046983
Lja1g5558 373 PANTHER TRANSCRIPTION FACTOR PIF7 9 367 - -
Lja1g5558 373 MobiDBLite consensus disorder prediction 353 373 - -
Lja1g5558 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 257 IPR036638 GO:0046983
Lja1g5558 373 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 9 367 IPR031066 -
Lja1g5558 373 Pfam Helix-loop-helix DNA-binding domain 208 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5558 Lja-Chr1 96620609 96625251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5558 12 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 35.985 2.31e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g5558 HLH 4.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5558 - - lja:Lj0g3v0063509.2 369.777