Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5550 ATGATAAAAAAAAAACAAGATCAAAGACACGACCATTCTTGTTCAAAGTTCAATTTTTCTTGTCCCCCACCACAACCTGATGACAGGCCACTCCAACAAAACAAACACCTCAATGTCTTCAACTTGAATTTCCTCATAGTTTCTATTCTACCACTTTATAGATTCACTCAAGCACAAGATCAGTTTTATTTGCTCATAGAAGAAAACACCAATCACACAAGAGAACGATCATTGATGTCAGAGCACTTCCTGTTACTCTGTTTTTTCATTCTTTTCTCAGGTAAACTGGTTGCTGGTGATTATTCATTGGACACAGACAAACAAGTTCTGCTGAGTCTGAAATCCTACTTGGAAAATCAAACAGTTGCAAACAAAGGAGGGTACATAAACTGGAACAAGAACAGTTCAAATCCTTGTGAGTGGTCAGGAATCTCTTGCAGCCTCTTCAATGGTACAACTTGGAGGGTTGTGAGAGTGGAAATCTCAGCTAGTGAGATAGCAGGTACGATATTCCAGAACTTCTCTCACCTCACTGAGCTTACACACCTTGATCTCTCTTGGAATTCACTCTCTGGGGTCATTCCTGAGGATTTGAACCGGTGCCAGAAGCTTGTGTTTCTCAATCTATCGCGTAATATCCTCGAGGGGGAGCTGAATTTGAGTGGCTTGAAGCGCTTGCAAACACTGGATTTGTCTGTGAATAGAATTCATGGTTGGATTGGGTTGAGTTTCCCTGACATGTGTGATAGTTTGGTCACTTTGAATGTTTCACAGAATCACTTCACAGGAAGGATTGATGAATGCTTTGAAGAGTGCTTGAAATTGCAGTACTTGGATTTGAGCAGCAATAATCTGAGTGGGGGTTTGTGGAGTGGAATTTCAAGGCTGAAGGAGTTTTCAGTTTCAGAGAACAATCTCAGAGGGGTTGTTGCTGTTCCTTCTTTTCCAGGGAATTGTAGCCTTGTAAAATTGGATCTTTCAGTTAATGGGTTTGTTGGTGAAGCCCCAAAGGAGGTTGCTAACTGCAAGAATTTAGAGATTCTCAATCTTTCTAACAACATTTTTACCGGAGATGTTCCCGAAGAAATCGGTTCCATTTCGGGTCTTCTTTCGTTGTTCTTGCAGAATAACAGTTTCTCAAGAGAAATTCCGGAGACCCTTTTGAGCTTGACCAATTTATTTATCTTGGATTTAAGCAGGAACAAGTTTGGTGGTGAGATACAAGAGATTTTTGGGAAATTCAAGCAAGTGAAGTTTCTTCTGCTGCACTCAAATTCTTACACTGGAGGATTGAACACATCAGGGATTTTCTCATTGACAAACCTTAGCCGCTTAGACCTAAGCTTCAACAACTTTTCAGGTCCATTACCAGCTGAAATCTCTCAAATGTCAAGTCTCACGTTCTTAACTTTAACCTACAATCAGTTCAGTGGACCTATTCCTTCTGAATTGGGAAAATTGACTCACTTGCTAGCACTTGATCTTGCCAACAACAGTTTCAGTGGACCAATCCCACCAAGCCTTGGAAACTTGAGCTCTCTCTTGTGGCTAATGCTTGCAAACAATTCACTAACAGGAGAAATCCCACCAGAGTTGGGAAACTGCTCAAGCATGCTATGGTTGAACCTGGCAAACAACAAACTCTCAGGAAAATTTCCTTCTGAATTAACCAAAATTGGAAGAAATTCTCTTGCCACATTCGAATCTAATCGTAGACGTATCGGTCGAGTTTCGGGTAATAGTGAATGTTTATCAATGAGGAGATGGATACCTGCTGATTACCCTCCATTCAGCTTTGTGTATTCAATCCTTACAAGGAGGAATTGTAGAGCCATTTGGGACAGATTGCTCAAAGGTTATGGTGTTTTCCCTGTGTGCACATCTGAATACTCTTCTAGATCATCTCATATATCTGGTTATGTTCAGCTAAGGGGGAACCAGCTGAGTGGTGAAATTCCACCAGAAATTGGGACCATGATGAACTTCAGTATATTGGATTTGGGGGATAACATGTTCTCTGGGAAGTTTCCTCAAGAGATGGTGAGTTTGCCACTTGTTGTATTGAACATGACCAGAAACAATTTTTCTGGTGAAATTCCAATGAAAATTGGCAACATGAAGTGCTTGCAGAATTTGGATCTGTCTTGGAACAATTTCTCAGGGACATTTCCTTCAAGTTTGGTTAACTTGGATGAGCTTAGCAGGTTCAACATCTCATACAATCCCTTCATATCTGGTGTGGTTCCACCATCTGGACACTTGCTTACATTTGATTCATATTTGGGTAACCCCCTCTTAAACCTCCCAACTTTCATTGATAACACCCCAGATGAAAGAAATAGGACTTTTCACAAACACCTGAAAAATAAATCCACAACAGGTCCTTTCTGTGTGGCTCTGACACTTTCTATCCTGTTCTTTGGACTTCTTCTCACAACAGTTTGTTTCTTATTAAAAAGAAAATCTGCCGAACCCGGATTCGACAAAAGCCAGGGTCATGAGGATTCAAGTAGCACAGGAGGAACAGGATCATCGCCATGGATGTCTGATACTGTTAAGATATTCCACTTAAACAACACAATTTTCACACATGCGGACATCTTGGAAGCAACAGGAAACTTCACAGAGAAGAGGATCATAGGAAAAGGTGGGTTTGGAACAGTGTACAGAGGGATTTTCCCTGATGGGAGAGAAGTGGCTGTGAAGAAGCTCCAAAGAGAAGGAATAGAAGGTGAGAAAGAATTCAGAGCTGAAATGCAGGTTCTCAGTGGTCATGGATTTTCATGGCCCCATCCAAACCTTGTCACACTCCATGGTTGGTGTCTCTATGGTTCACAGAAGATACTGGTCTATGAGTACATAGGAGGTGGAAGCTTGGAGGATGTTGTGACTGACACAGCTAAGTTTACATGGAGGAGGAGAATAGAAGTGGCAATTGATGTGGCTAGAGCACTAGTGTACTTACACCATGAGTGCTACCCTTCTATTGTGCACAGAGATGTGAAGGCTAGTAATGTTTTATTAGAGAAAGATGGTAAAGCCAAAGTCACAGATTTTGGACTTGCTAGAGTTGTTGATGCTGGAGATAGTCATGTGAGCACTATGGTGGCTGGCACAGTGGGGTATGTTGCACCAGAATATGGACAGACATGGCAAGCTACTACAAAAGGGGATGTTTACAGTTTTGGGGTGTTGGCTATGGAGCTTGCAACAGGGAGAAGAGCAGTGGATGGAGGAGAAGAATGTTTGGTGGAACGGGTTCGGCGTGTTACAGGTTCTGGAAGACATGGGTTGAACTTGAGTCCCTCTAGGCTAGTTGGGGGAGCAAAGGAGATGGGGAAGCTGCTACAAGTTGGGTTGAAGTGCACACATGACACACCACAGGCTAGGTCTAACATGAAGGAGGTTCTAGCTATGCTGATTAAGATATACAACAACCACAATGGAGACTCAAATTATGAGCACCTAGTTTAG 3474 0.4206 MIKKKQDQRHDHSCSKFNFSCPPPQPDDRPLQQNKHLNVFNLNFLIVSILPLYRFTQAQDQFYLLIEENTNHTRERSLMSEHFLLLCFFILFSGKLVAGDYSLDTDKQVLLSLKSYLENQTVANKGGYINWNKNSSNPCEWSGISCSLFNGTTWRVVRVEISASEIAGTIFQNFSHLTELTHLDLSWNSLSGVIPEDLNRCQKLVFLNLSRNILEGELNLSGLKRLQTLDLSVNRIHGWIGLSFPDMCDSLVTLNVSQNHFTGRIDECFEECLKLQYLDLSSNNLSGGLWSGISRLKEFSVSENNLRGVVAVPSFPGNCSLVKLDLSVNGFVGEAPKEVANCKNLEILNLSNNIFTGDVPEEIGSISGLLSLFLQNNSFSREIPETLLSLTNLFILDLSRNKFGGEIQEIFGKFKQVKFLLLHSNSYTGGLNTSGIFSLTNLSRLDLSFNNFSGPLPAEISQMSSLTFLTLTYNQFSGPIPSELGKLTHLLALDLANNSFSGPIPPSLGNLSSLLWLMLANNSLTGEIPPELGNCSSMLWLNLANNKLSGKFPSELTKIGRNSLATFESNRRRIGRVSGNSECLSMRRWIPADYPPFSFVYSILTRRNCRAIWDRLLKGYGVFPVCTSEYSSRSSHISGYVQLRGNQLSGEIPPEIGTMMNFSILDLGDNMFSGKFPQEMVSLPLVVLNMTRNNFSGEIPMKIGNMKCLQNLDLSWNNFSGTFPSSLVNLDELSRFNISYNPFISGVVPPSGHLLTFDSYLGNPLLNLPTFIDNTPDERNRTFHKHLKNKSTTGPFCVALTLSILFFGLLLTTVCFLLKRKSAEPGFDKSQGHEDSSSTGGTGSSPWMSDTVKIFHLNNTIFTHADILEATGNFTEKRIIGKGGFGTVYRGIFPDGREVAVKKLQREGIEGEKEFRAEMQVLSGHGFSWPHPNLVTLHGWCLYGSQKILVYEYIGGGSLEDVVTDTAKFTWRRRIEVAIDVARALVYLHHECYPSIVHRDVKASNVLLEKDGKAKVTDFGLARVVDAGDSHVSTMVAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAVDGGEECLVERVRRVTGSGRHGLNLSPSRLVGGAKEMGKLLQVGLKCTHDTPQARSNMKEVLAMLIKIYNNHNGDSNYEHLV* 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5550 1157 Gene3D Ribonuclease Inhibitor 634 783 IPR032675 -
Lja1g5550 1157 Gene3D Ribonuclease Inhibitor 244 314 IPR032675 -
Lja1g5550 1157 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 80 1147 - -
Lja1g5550 1157 Pfam Leucine Rich Repeat 180 199 IPR001611 GO:0005515
Lja1g5550 1157 SUPERFAMILY Protein kinase-like (PK-like) 854 1141 IPR011009 -
Lja1g5550 1157 SMART LRR_sd22_2 177 200 - -
Lja1g5550 1157 SMART LRR_sd22_2 272 295 - -
Lja1g5550 1157 SMART LRR_sd22_2 706 732 - -
Lja1g5550 1157 SMART LRR_sd22_2 223 244 - -
Lja1g5550 1157 SMART LRR_sd22_2 439 468 - -
Lja1g5550 1157 Gene3D Transferase(Phosphotransferase) domain 1 955 1155 - -
Lja1g5550 1157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 996 1008 IPR008271 GO:0004672|GO:0006468
Lja1g5550 1157 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g5550 1157 SMART serkin_6 874 1142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5550 1157 SUPERFAMILY L domain-like 106 309 - -
Lja1g5550 1157 ProSitePatterns Protein kinases ATP-binding region signature. 880 903 IPR017441 GO:0005524
Lja1g5550 1157 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 80 1147 - -
Lja1g5550 1157 SUPERFAMILY L domain-like 642 751 - -
Lja1g5550 1157 MobiDBLite consensus disorder prediction 825 845 - -
Lja1g5550 1157 Pfam Leucine Rich repeat 272 287 IPR001611 GO:0005515
Lja1g5550 1157 CDD STKc_IRAK 880 1143 - -
Lja1g5550 1157 Gene3D Ribonuclease Inhibitor 394 593 IPR032675 -
Lja1g5550 1157 Pfam Protein kinase domain 874 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5550 1157 Gene3D Ribonuclease Inhibitor 102 243 IPR032675 -
Lja1g5550 1157 ProSiteProfiles Protein kinase domain profile. 874 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5550 1157 SMART LRR_typ_2 223 246 IPR003591 -
Lja1g5550 1157 SMART LRR_typ_2 439 463 IPR003591 -
Lja1g5550 1157 SMART LRR_typ_2 511 535 IPR003591 -
Lja1g5550 1157 SMART LRR_typ_2 366 390 IPR003591 -
Lja1g5550 1157 SMART LRR_typ_2 177 201 IPR003591 -
Lja1g5550 1157 SMART LRR_typ_2 706 730 IPR003591 -
Lja1g5550 1157 Pfam Leucine rich repeat N-terminal domain 104 147 IPR013210 -
Lja1g5550 1157 Gene3D Phosphorylase Kinase; domain 1 843 953 - -
Lja1g5550 1157 Gene3D Ribonuclease Inhibitor 315 393 IPR032675 -
Lja1g5550 1157 SUPERFAMILY L domain-like 250 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5550 Lja-Chr1 96379813 96384012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5550 420 751 Receptor kinase-like Gene Family AT1G55610 27.596 1.20e-10 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Lja1g5550 Pkinase 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5550 - - lja:Lj1g3v0526480.1 1773.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5550 1 96379813 96384012 Lja1g5550 1 96379813 96384012 ECH