Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5548 ATGGGGTGTGTGAGTTCGAAGCAAGCGGTGTCGGTAACGCCGGCGATCGACCACTCCGGCGCGTTCGGGAGGAAACCCGCCGAGCCGGAAAACAACAAGAAGGTGGTCGGAGCGATCCAGCGCGGCGAGGTTGGTGAGTCAGGGAGAGCGAGTTCGAACGGTTGCGAGTCGTCGTTGAGCTTCAGACTGGGGAACCTGCATAGGTACGTGCAGGGGGAGCACGTTGCGGCTGGCTGGCCGGCGTGGCTCAGCGCCGTCGCCGGTGAAGCCATTCACGGCTGGGTTCCGCTCCGCGCCGACGCGTTTGAGAAACTCGAGAAGATTGGGCAAGGGACATATAGCAGTGTGTTTCGGGCGAGAGAGGTTGAAACGGGGAAGATAGTGGCTCTGAAGAAGGTGAGATTTGACAATTTTGAACCGGAGAGTGTGAGGTTTATGGCGCGGGAGATTATGATTCTGCGGCGGTTAGATCATCCCAATATCATAAAGCTGGAGGGGTTAATCACTTCCAGATTGTCGTGTAGCATGTACCTTGTCTTTGAGTACATGGAGCATGATGTTACAGGGCTCTTGTCTGCTCCTGATATCAAGTTTACTGAACCTCAGATCAAGTGCTACATGAAGCAGTTGCTATCTGGTATTGAGCATTGTCACTTGCGGGGTGTGATGCACAGGGATATCAAAGGGTCGAATCTTCTGGTGAATAATGAGGGAGTATTGAAGGTGGCGGATTTTGGATTGGCAAACTTCACAAGTTCTGGGCACAAGCAGCCCCTCACTAGCCGTGTTGTCACCTTGTGGTACCGTCCGCCGGAGCTTCTCCTTGGCGCGACGGATTACGGCCCATCTGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCAGAGCTACTTGTTGGGAAGCCTGTACTTCAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTCAAACTTTGTGGCTCCCCACCTGAGGATTACTGGAAAAAGACTAGACTTCCTCATGCAACTTTGTTTAAGCCTCAGCACCCATATGATAGCTGCCTCAGAGAGTCTTTTAAAGATTTGCCTCCGGCCAGTGTAAATCTGTTGCAAACTCTTCTTTCTGTTGAACCTTACAAACGTGGGACTGCCACATCTGCTCTCTCCTCCGAGTATTTCAGAACAAAACCTTATGCATGTGAGCCATCAAGCTTGCCAACATATCCACCAAGCAAAGAAATTGATGCAAAGCACAGGGAGGAGTCTAGGAAAAAGATTGGGGGACGAGCTCGAGGAAATGAAACAAGAAAATCATCAAGAAAGCCACTGGGATCCAATAAACTACTAGCCCCAGCTGAGAATTTGGCTAGTCAAACTCAAACTGCCCAAAAGGCCAATGGTAGATCTTTCCGCATCCTAAAAGAAGAGAAGAATAACATAGGTGAGGAGGCACAAAAGCCATCCGGTGGTAAACCTGAAGATGCTTCCCATATGAAGAATGCATCTCAAGGAGATATTCCCTTTTCAGGGCCATTACAAGTTTCAACATCAAGTGGCTTTGCATGGGCAAAAAGCCGTAAAGATGACACTTCAATTCGATCCCATTGTCGAACGATTTCTAGAGGACATATTTTCAATCCATTAGAACCTTCAACATTAAATTCAAGGAATTATTCGGACATCAAAAACCAGGAAAATAAGGAGTCTTGTGGGAGACGCACCAAATCTAGGGGCCATGACCTACTTGAAAATTCTAAGCCTTCTATGCAGAATCAGTGGAGTAGGTTTGATCGCCCAGATTCATTTGATGCTTCGGATGAGTACCACTCACAAGAACTGTCAATGACGCTTTATCATAGAGAAGATTCAATGTCCAAGAGAAGTAACCTGAGTTTTCAGGATCAAGGAGAAAAGGTTGAATTTTCCGGACCCCTATTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAAGCATGAGCGTCACATCCGGCAAACTGTCCGTAGGTCATGGTTCCAGAGAGTTAAGAAGCATGAGAAGTAA 2022 0.4787 MGCVSSKQAVSVTPAIDHSGAFGRKPAEPENNKKVVGAIQRGEVGESGRASSNGCESSLSFRLGNLHRYVQGEHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRAREVETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSMYLVFEYMEHDVTGLLSAPDIKFTEPQIKCYMKQLLSGIEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANFTSSGHKQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLVGKPVLQGRTEVEQLHKIFKLCGSPPEDYWKKTRLPHATLFKPQHPYDSCLRESFKDLPPASVNLLQTLLSVEPYKRGTATSALSSEYFRTKPYACEPSSLPTYPPSKEIDAKHREESRKKIGGRARGNETRKSSRKPLGSNKLLAPAENLASQTQTAQKANGRSFRILKEEKNNIGEEAQKPSGGKPEDASHMKNASQGDIPFSGPLQVSTSSGFAWAKSRKDDTSIRSHCRTISRGHIFNPLEPSTLNSRNYSDIKNQENKESCGRRTKSRGHDLLENSKPSMQNQWSRFDRPDSFDASDEYHSQELSMTLYHREDSMSKRSNLSFQDQGEKVEFSGPLLSQMHTVDELLEKHERHIRQTVRRSWFQRVKKHEK* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5548 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Lja1g5548 673 SUPERFAMILY Protein kinase-like (PK-like) 95 391 IPR011009 -
Lja1g5548 673 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Lja1g5548 673 MobiDBLite consensus disorder prediction 462 486 - -
Lja1g5548 673 CDD STKc_CDK9_like 102 386 - -
Lja1g5548 673 PANTHER CELL DIVISION PROTEIN KINASE 32 666 - -
Lja1g5548 673 Gene3D Transferase(Phosphotransferase) domain 1 185 423 - -
Lja1g5548 673 SMART serkin_6 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5548 673 MobiDBLite consensus disorder prediction 556 575 - -
Lja1g5548 673 Gene3D Phosphorylase Kinase; domain 1 89 184 - -
Lja1g5548 673 MobiDBLite consensus disorder prediction 444 460 - -
Lja1g5548 673 MobiDBLite consensus disorder prediction 405 434 - -
Lja1g5548 673 Pfam Protein kinase domain 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5548 673 MobiDBLite consensus disorder prediction 395 502 - -
Lja1g5548 673 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 32 666 - -
Lja1g5548 673 MobiDBLite consensus disorder prediction 556 587 - -
Lja1g5548 673 ProSiteProfiles Protein kinase domain profile. 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5548 Lja-Chr1 96339034 96344326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5548 94 418 Core Cell Cycle Gene Families AT5G10270 51.026 5.20e-115 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja1g5548 Pkinase 1.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5548 - - gmx:100803328 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5548 1 96339034 96344326 Lja4g2121 4 22733425 22738332 ECH
Lja1g5548 1 96339034 96344326 Lja1g5548 1 96339034 96344326 ECH