Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5547 ATGGCGCTGTTCCGGAGGTTCTTTTACCGGAAGCCGCCGGATCGCCTCCTCGAAATCTCTGAGAGGGTCTATGTTTTTGATTGTTGCTTCTCCACGGATGTCTTGGAAGAAGATGAGTACAGAGTTTATGTTGGGGGCATTGTAGCTCAGCTACAAGATCACTTTCCAGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGAACAGGCGCAGCCAAATTTCAGACATACTGTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAATATGAAGGTTGTCCACTTCTTCCTTTGGAGATGATTCATCATTTCCTTCGATCAAGTGAAAGTTGGCTGTCTTTGGAGGGACAACAAAATATACTTTTGATGCATTGTGAAAGGGGGGGTTGGCCTGTGCTGGCATTTATGCTAGCTGGTCTTCTGTTGTATCGGAAGCAATACACTGGAGACCAGAAGACCCTTGAAATGGTCTACAAGCAAGCTCCCAAAGAACTTCTTCAACTTTTATCTCCTTTGAACCCACAGCCTTCTCAGTTAAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTTCTGAGTGGCCTCCATCGGAAACACCCTTGTATTTGGATTGTCTGATTCTTAGAGTCCTTCCATTATTTGATGGCGGAAAAGGTTGCAGGCCTGTTGTACGTGTGTATGGTCCGGACCCTTCAAAGCCTTCCAATAGAAGTTCTCAGCTTCTTTTCTCGACTTCAAAATCCCAAAATCATGTCCGCCACTACCTACAGGCAGAATGTGTGCTCGTGAAAATTGATATCCGTTGTCGTGTTCAAGGGGATGTCGTTCTTGAATGCATACATTTAAGTGAAGATTTTGTTCGTGAGGAGATGATGTTTAGAGTCATGTTTCATACTGCATTTGTACGGTCAGATATTTTGGTTCTGAGCCGTGATGAAATTGATATTTTGTGGGATGCAAAGGACCAGTTCCCCAAGGATTTTAAATCTGAGGTGCTTTTTTTGGACGCTGATGCTGTTCTACCTAATATAACCACAGTCATTGTAAATGGAGATGCAAATGAGCCAGAAGAAAGTGCTTCACCTGAGGAATTCTACGAAGCGGAAGAGATCTTCAGCAATGTAATGGATATACAGGAAGGTAAGGGGGAATATGATTCTTCAAGGATTCATGAAGATGCAGTAGATGATGGAAGTCATAAAGAGGTCTGGAAAGAGTATTCAGATCCTCATACTTCTCAGGATTCTGTGCAAGATGATGGGATTCATCAACATGTTGGAAGGGCAGATGCTGATATTAGTATGATAAAAGACATTATTGTTGATGATGTGAAGTACAAGCTTGACCCGAGTGTGGATTTTGATTCTCATGGTGTGAAAGATATTACAGTGGATGATGGAGAAAATAAGTCAACTCAAACTGCAGCGACTTTTGATATGATGAATACTATGGAGACAAAGGAAGTCACTATGGATAGGCATGATGAGTTGGCAGCTACGCAAAACAAGTTTGACAAAGATAACAATGCAACAAAAACAGAATTAGAGTCTGAGGAAATGCAGCTGGTGCATGATCATTCCAGATCAGAATCAGATAAATTACTTCCATCTGCTGAAAAGAATCAACTTCCTTCAAACTCAAGTTCAGTGGGAGATGCAGTTGCAGCAAAGCAAAAGACTAAACACCATGAACAACATGGTTTTCACCATGAACAACATGGTTCTCACCATGAACATGGTTTTCATGCAAAACTAGCAAAACCAGATGTGGCGCCTAGGTGGATACCTTCCAACAAGGGTTCTTATCAAGATTCATTGCATGTCTCATATCCACCAACAAGGCATAATAATTCACCTGCTGCTCTGTCAAATGCTACTTCTGCAAACGAGAAAATGACTGATGCCAAAGGAAAATCTGCTTCTGGTTCTCATGTCTCTAGAGCAATGGTTTCTACAGACATGACAAGTGCAATTATGTCAGAAGTTTGTGAATCGCTTGGCGCAGTTTCCCTTCCTTGTCCTCCTCCACCACCACCACAACCACCACCTCTTCCTCCACTCCCTCCCTCTACTCCAATGTCTTCAGCAGATAGAGCTCCACTCCCTCCTCCCTCAACACCTCCAAAATCACTTAAAGCTCTACCTCCACCTCCACCCCCTCCTTCAGCTCCTTTTATTGCAGGAAGTGCAATTATTTCAAAAGTTTCTAAATCAGTTGGTGATGTTTCCCTTCCTTGTTCTCCTTCACCACCACCACCACAACCCCCTCCTCCATCTCTACCCCCAACCACACCTCCTCCGGCTTCCGTTATTGCAGGAAGTGCAATTATGTCAGGTGAAGCTTCTTTTCCTTGTTCTCTTCCATCACCACCACAACCACCACCTCCTCCTCCAAAGTATGGCGTTACAACCATACCTCCTTCTCCTCCTTTACTCATGTCTGCAACAGATAGAGCTCCACTCCCTCCTCCCTCAACACACCTAACATCACTTACAACTCCATCTCCTCCAAGCTCACGCACAACAATAACCCAAACTCCACTTCCTTCACCACCACAACCACCATCTCCTCCCCCAAAGTATGGCGTTGCAACCATACCTCCTCCACCTCTGCCTATGTCTTCAATAGATAGAACTCCACTCCCTCTGCTGTCAACACCCCTAACATCACTTGATGCTCCACCTCCAACCCCAACTCTGTCCCCACCCCCACCCCCACCCCCAACCCCACCCCAACCTTTACCACCACTTCTCACTTCTTCTCCTGTATGCAGAGCTCCACCACCACCACCTTTTGATATAGTTACATCTCCTTCACTTCAACCTCCTCTTAGTATAGCTTCACCACCACCACCCCCACCTCCACCGCCACCGCCACCTCTTCCTTCATCAAGTTCCCCACCTCCACCTCCTTTATATAGAGAGCCACTACCTCCACCTCCACCTCCACCGCCACCTCCTCCTCCATCAAGTGCCCCACCTCCCCTACCTGGAGCGCCACCAACTCCTCCTCCACCTCCTGTACCTCCCCTAATGCATGGAGCGCCACCACCTCAACCTTCTCCAGGTAGCCAAGGCCCACCTCCAGGTGTCCGAGGCCCACCCCCTCCACCCCCGCCTCCTGTAGCTCCCCCAGTGCATGAAGCGCCACCACCTCCACCTCCACCTCCTCCAGGTAGCCAAGGCCCACCTCTAGGTGTCCGAGGCCCACCCCCTCCACCCCCGCCTCCTGTAGCTCTCCCAGTGCATGGAGCGCCACCACCTCCACCTCCTCCAGGTAGCCAAGGCCCACTTCCAGGTGTCCGAGGCCCACCCCCTCCACCCCCACCTCCTGTAGCTCCCCCAGTGCATGAAGCGCCACCACCTCCACCTCCACCTCCTCCAGGTAGCCAAGGCCCACCTCCAGGTGTCCGAGGCCCACCCCCTCCACCCCCACCTCCTGTAGCTCCCCCAGTGCATGGAGCGCCACAACCTCCACCTCTTCCAGGTAGCCAAGGCCCACCCCCTCCACCCCTACCTCCTGTAGCTCCCCCAGTGCATGGAGCTCCACCACCTCCAGGTGTCCGAGGCCCACCACCTCCACCTCCTCCTAGAAGTCAGGCTCCTGGTGCTCCTCCTCCTCCAGGTGGCGCACCTCCACCACCTCCTCCCCTTGGTTCTAAAGGGGCAGTGGGAGCGGATCCAAGAGGAAGAGGGCGCGGACTTGCACGTCCAGGTGCTAGTGCAGTGGCAGCCCGACAGTCCAATTTAAAGGCTCTGTATTGGAGTAAGGTCTCAACAGCAATGAAAGGAAGTTTATGGGAAGAATTACAAAGACCCGGAGAATCTCAAAGTGGACAAGAGTTTGACGTTTCAGAGATAGTGAAGTATTTTTCTGCAAATGTTCCAAAACCTGCTGATTCTGGTGGTAAATCTGGAGGGCGAAACAAATCTGCTGGATCCAAACCTGAAAAAATCACCTTGGTTGACCTAAGGAGAGCCTACAATACTGAAATTATGCTCACAAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTTCTAGCTTTGGATGAATCGGTGTTAGATGTTGATCAGGTGGAAAATCTCATCAAATTTTGTCCTACCAAAGAGGAGATGGAACTGTTGAAGGCATATACTGGTGACAAGGAAAATTTGGGAAGGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTGGAATCAAAATTAAGAGTTTTTGCTTTCAAGATTCAGTACGGTTGTCAGATTACAGAGTTTAAGAGGAGTTTAAACACGGTGAACTCTGCCTGTGAAGAGGTCCGCAATTCGCTAAAACTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGTAATACATTAAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTGGAAAGTCTTTTAAAGCTCACTGATACTCGTGCTTCTAACAGTAGAATGACACTGATGCATTATCTTTGCAAGGTCCTAGCCGAAAAGTCTCCTGGACTCCTTGATTTTCACCTGGGCCTTGTTAGCTTGGAAACAGCCACTAAGATACAACTAAAGTCATTAGCAGAAGAAATGCAGGCAATCATCAAAGGATTGGAAAAGGTTAAACAGGAGCTTGCTGCATCGGAAAATGATGGCCCTGTGTCCGAAGTTTTCCGTAAGACATTGAAAGAATTCGTTGGTGTAGTTGAGTCAGAGGTGGCATCTCTAACAAACCTATATTCTGTAGTGGGCAGAAATGCAGATGCACTTGCACAATACTTTGGTGAGGATCCTGCCCGTTGTCCATTTGAGCAAGTTACAGCAACTCTATTAAATTTTGTAAGGTTGTTTCGCAAAGCGCATGAAGAGAATTGCAAACAAGCAGAGTTAGATAAAAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCCAAAGGCATTGACTCAACTAGCAAGAGTGGAAAAGATAAAGAAGGCAAAAGCTGA 4986 0.4743 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYRVYVGGIVAQLQDHFPDASFMVFNFREGNRRSQISDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNILLMHCERGGWPVLAFMLAGLLLYRKQYTGDQKTLEMVYKQAPKELLQLLSPLNPQPSQLRYLQYISRRHLGSEWPPSETPLYLDCLILRVLPLFDGGKGCRPVVRVYGPDPSKPSNRSSQLLFSTSKSQNHVRHYLQAECVLVKIDIRCRVQGDVVLECIHLSEDFVREEMMFRVMFHTAFVRSDILVLSRDEIDILWDAKDQFPKDFKSEVLFLDADAVLPNITTVIVNGDANEPEESASPEEFYEAEEIFSNVMDIQEGKGEYDSSRIHEDAVDDGSHKEVWKEYSDPHTSQDSVQDDGIHQHVGRADADISMIKDIIVDDVKYKLDPSVDFDSHGVKDITVDDGENKSTQTAATFDMMNTMETKEVTMDRHDELAATQNKFDKDNNATKTELESEEMQLVHDHSRSESDKLLPSAEKNQLPSNSSSVGDAVAAKQKTKHHEQHGFHHEQHGSHHEHGFHAKLAKPDVAPRWIPSNKGSYQDSLHVSYPPTRHNNSPAALSNATSANEKMTDAKGKSASGSHVSRAMVSTDMTSAIMSEVCESLGAVSLPCPPPPPPQPPPLPPLPPSTPMSSADRAPLPPPSTPPKSLKALPPPPPPPSAPFIAGSAIISKVSKSVGDVSLPCSPSPPPPQPPPPSLPPTTPPPASVIAGSAIMSGEASFPCSLPSPPQPPPPPPKYGVTTIPPSPPLLMSATDRAPLPPPSTHLTSLTTPSPPSSRTTITQTPLPSPPQPPSPPPKYGVATIPPPPLPMSSIDRTPLPLLSTPLTSLDAPPPTPTLSPPPPPPPTPPQPLPPLLTSSPVCRAPPPPPFDIVTSPSLQPPLSIASPPPPPPPPPPPPLPSSSSPPPPPLYREPLPPPPPPPPPPPPSSAPPPLPGAPPTPPPPPVPPLMHGAPPPQPSPGSQGPPPGVRGPPPPPPPPVAPPVHEAPPPPPPPPPGSQGPPLGVRGPPPPPPPPVALPVHGAPPPPPPPGSQGPLPGVRGPPPPPPPPVAPPVHEAPPPPPPPPPGSQGPPPGVRGPPPPPPPPVAPPVHGAPQPPPLPGSQGPPPPPLPPVAPPVHGAPPPPGVRGPPPPPPPRSQAPGAPPPPGGAPPPPPPLGSKGAVGADPRGRGRGLARPGASAVAARQSNLKALYWSKVSTAMKGSLWEELQRPGESQSGQEFDVSEIVKYFSANVPKPADSGGKSGGRNKSAGSKPEKITLVDLRRAYNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMELLKAYTGDKENLGRCEQYFLELMKVPRVESKLRVFAFKIQYGCQITEFKRSLNTVNSACEEVRNSLKLKEIMKKILYLGNTLNQGTARGSAVGFKLESLLKLTDTRASNSRMTLMHYLCKVLAEKSPGLLDFHLGLVSLETATKIQLKSLAEEMQAIIKGLEKVKQELAASENDGPVSEVFRKTLKEFVGVVESEVASLTNLYSVVGRNADALAQYFGEDPARCPFEQVTATLLNFVRLFRKAHEENCKQAELDKKKAEKEAEMEKAKGIDSTSKSGKDKEGKS* 1662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5547 1661 MobiDBLite consensus disorder prediction 516 585 - -
Lja1g5547 1661 Coils Coil 1524 1551 - -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 849 878 - -
Lja1g5547 1661 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1318 1645 - -
Lja1g5547 1661 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 788 807 - -
Lja1g5547 1661 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1242 1643 IPR015425 -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 1297 1318 - -
Lja1g5547 1661 Coils Coil 1618 1647 - -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 516 537 - -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 825 848 - -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 672 727 - -
Lja1g5547 1661 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 607 648 - -
Lja1g5547 1661 PANTHER FORMIN-J 1 1651 - -
Lja1g5547 1661 SMART PTEN_C2_2 198 1355 IPR014020 -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 747 770 - -
Lja1g5547 1661 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 558 585 - -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 672 1242 - -
Lja1g5547 1661 Gene3D - 205 336 - -
Lja1g5547 1661 Pfam Formin Homology 2 Domain 1248 1617 IPR015425 -
Lja1g5547 1661 SMART it6_source 676 1661 IPR015425 -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 1627 1661 - -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 891 1223 - -
Lja1g5547 1661 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lja1g5547 1661 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Lja1g5547 1661 Gene3D Formin, FH2 domain 1261 1657 IPR042201 -
Lja1g5547 1661 MobiDBLite consensus disorder prediction 538 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5547 Lja-Chr1 96316283 96334755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5547 1 689 FH2 protein (formin) Gene Family AT5G07740 57.917 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5547 - - cam:101505448 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5547 1 96316283 96334755 Lja1g5547 1 96316283 96334755 ECH