Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5545 ATGGCCACCACCACAACTGAATCATCTCCTCCCTCTTCCCTCGACCACGCCCTTCGCGACGTCGACGACTACGTTCTGGCAGATGAACCGGAAGGTTTGGCACGGGATACATTACATCATGTTTATGAGCTTGTTCAGAAAGGCAATGAAGCATTTCGAGAGAACAGAATGGAAGCGGCAATCAACTTCTACTCAAGAGCCAATAACATCAAATCTGGTGATCCAATCATCCTCAGAAATCGAAGCACTGCTTATGTTAGGATTAGCAAATATTTAATGCACAGACCACCATCATCTTCGGAGCATAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTGGTTGAACTCCAAAGTAATTCAGTAAAGTCATACATTTTAAAGGCCAATGCTCTTCTTCTGTTGGAGAAATATGAAAATGCCCGGGATGTTATTCTTTCAGGACTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGATTCTCTTCAAAATTTGGAAAGAGTGTCATCTAGTTCAAAAGGGATGAGCACTCATGGACCGACAGAGCGTAATGATGACTTTGATTGCACTCTGTGCCTGAAGTTACTGTATGAACCTGTGACAACCCCTTGTGGACATTCTTTTTGCCGTTCATGTCTATTTCAGTCAATGGATTGTGGGAACAGATGCCCATTGTGCAGGACTGTTTTGTTTATTAGTCCTAGAACGTGTTGCACCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGAATGACAGTTTAATCAACGGTGGTGTAGATTTTCTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGGTACAGACTTATGGTAAGAAGAATAATGGAAGGCAATCATCGCATGGGAATGGTTATAATTGATTCTTCAACTGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAGATCACAGAGTGTGAGCCCCTTCCTGATGGTCGGTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGCATCATCCAATCTTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCACCAGAAGGGACAAGAGAAAGACAGATATTGCAGGAATTGACATCTAATGCGGCAGAAAGTGCCCGATCATGGATAGCAAGAGCTAAAGAAGCAGCAAGACAAGATCAAAGAAAACTTGAGAGGCTCCTGAATGTTGAAGTAATGATGCCCTCACCACGAGATCCCGAGCGCTTTAGTTTTTGGCTGGCCACCCTCTCCAATCGGAGGCCTTCAGAAAGATTGGACCTCCTTCGTATTAGAGATACCACAGAGAGGATTAGACGAGGTTTGATATTTCTCCGACAAGAGGAACAAGGCTGCAGAATTCAATAA 1470 0.432 MATTTTESSPPSSLDHALRDVDDYVLADEPEGLARDTLHHVYELVQKGNEAFRENRMEAAINFYSRANNIKSGDPIILRNRSTAYVRISKYLMHRPPSSSEHRPLSGLDPTTLAELGLKDAEKLVELQSNSVKSYILKANALLLLEKYENARDVILSGLQVDPFSNSLRDSLQNLERVSSSSKGMSTHGPTERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRTCCTSVTLKNIIQKNFPEEYAERKQENDSLINGGVDFLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVIIDSSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIQSWDQDGYRVAEVEWIQDIMPPEGTRERQILQELTSNAAESARSWIARAKEAARQDQRKLERLLNVEVMMPSPRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRQEEQGCRIQ* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5545 489 SUPERFAMILY PUA domain-like 283 479 IPR015947 -
Lja1g5545 489 Pfam Zinc finger, C3HC4 type (RING finger) 199 236 - -
Lja1g5545 489 Gene3D Tetratricopeptide repeat domain 31 181 IPR011990 GO:0005515
Lja1g5545 489 Coils Coil 411 431 - -
Lja1g5545 489 SMART ring_2 199 236 IPR001841 -
Lja1g5545 489 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 481 - -
Lja1g5545 489 Gene3D - 282 383 IPR046336 -
Lja1g5545 489 SUPERFAMILY TPR-like 40 172 IPR011990 GO:0005515
Lja1g5545 489 PANTHER RING FINGER PROTEIN 127 1 481 - -
Lja1g5545 489 ProSiteProfiles Lon N-terminal domain profile. 280 481 IPR003111 -
Lja1g5545 489 SUPERFAMILY RING/U-box 193 262 - -
Lja1g5545 489 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Lja1g5545 489 Gene3D - 415 481 - -
Lja1g5545 489 SMART lon_5 282 481 IPR003111 -
Lja1g5545 489 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
Lja1g5545 489 SMART tpr_5 41 74 IPR019734 GO:0005515
Lja1g5545 489 SMART tpr_5 132 165 IPR019734 GO:0005515
Lja1g5545 489 Pfam ATP-dependent protease La (LON) substrate-binding domain 283 480 IPR003111 -
Lja1g5545 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 277 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5545 187 240 C3H Transcription Factor Family AT1G74990 35.088 3.26e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5545 1 96141754 96152675 Lja1g5545 1 96141754 96152675 ECH