Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5543 ATGGCTGCAAGTTTTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTGTTCAGCGGATTAAGCAACAGTTCCCTTGGTTCAGCACATGAGATGACACACAACAATTATTTTTCTCAGCAGCAACGCACCTTCATACAAATGAGGACTGTTCTCAAGGTTGTGGACAATTCTGGGGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACTATAGTAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAAAGGTGGTATATGGGGTTGTTGTGCGCGCAGCAATGCAGAAGGGGAGATGTGATGGCAGCGAGGTCAGGTTTGATGACAATGCTGTTGTTCTTGTTGACAAGCAAGGCCAGCCTATTGGGACCAGAGTTTTTGGACCAGTACCTCATGAGCTTAGGCGGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATTGCATAA 492 0.4634 MAASFASRCSRVGRSLFSGLSNSSLGSAHEMTHNNYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVRFDDNAVVLVDKQGQPIGTRVFGPVPHELRRKKHVKILTLAGHIA* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5543 163 Hamap 50S ribosomal protein L14 [rplN]. 44 163 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja1g5543 163 SMART Ribosomal_L14_2 44 163 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja1g5543 163 SUPERFAMILY Ribosomal protein L14 45 162 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lja1g5543 163 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1 23 163 - -
Lja1g5543 163 Gene3D Ribosomal protein L14 44 163 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lja1g5543 163 ProSitePatterns Ribosomal protein L14 signature. 101 127 IPR019972 -
Lja1g5543 163 Pfam Ribosomal protein L14p/L23e 45 162 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja1g5543 163 TIGRFAM rplN_bact: ribosomal protein uL14 45 162 IPR005745 GO:0003735|GO:0006412|GO:0015934
Lja1g5543 163 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 23 163 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5543 Lja-Chr1 96036340 96041849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5543 55 146 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 36.364 3.28e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5543 K02874 - gmx:100527495 271.552