Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5541 ATGCTTGTGTTAATGTGGCCGGAAGAGAGTTTTTGTGATGTTCTATCTCAGGCTAAGAAACCCAAGGACCAGATTGTTGACATCGATGTCGGTGACGCTAACAACGGGCTTGCTGCTGTGGAATATGTTGAAGACATGTACAAGTTCTATAAGAGGGTTGAGAATGAGAGGCATCCCTATGCCTCATACATGGAGTCACAACCTGAGATTAATGAGAAAATGAGGGCTACCCTTGTTGATTGGCTGGTACTTGTTCACACCAAGTATGAGTTTTCACTTGAAACCCTCTACCTCACCATCAACATAATTGATCGGTATTCGGTTAATGACCTTGTCTTGCTCCCAGACGGAGCTTATTGTCATCAACAGATACTTGAGGTGGAGAAAATCATACTGAGAAAGCTGGAATGGAACTTGAGTGTGCCTACACCATTTGTTTTCCTAGTTCGTTTCATCAAGGCTTCCTCAGTTCCTGATCAAGATGAGGCGTTGGGGATGATGCATTATGCTACCTTGAAGTATTGCCCATCAATGATTGCTCTGCACACTGGTTACTCACAACAACAACTTATGGATTGTGCTACACTCTTGGTGAGCTTTCATTGCATGGGTGGGAATGGGAAGCTCAACGTTGTGTACAATAAGTACTGTGAACCTCATAGTGGAGCTGTTGGGCGGCTTCCACCAGCTAAAAATCTACTGACTTTAGAGGAGAGGATAGAGAGGATACACATTGATGGGAAGATAGAAAAGAAAAAAAGGAAGATGTTGTAA 774 0.4328 MLVLMWPEESFCDVLSQAKKPKDQIVDIDVGDANNGLAAVEYVEDMYKFYKRVENERHPYASYMESQPEINEKMRATLVDWLVLVHTKYEFSLETLYLTINIIDRYSVNDLVLLPDGAYCHQQILEVEKIILRKLEWNLSVPTPFVFLVRFIKASSVPDQDEALGMMHYATLKYCPSMIALHTGYSQQQLMDCATLLVSFHCMGGNGKLNVVYNKYCEPHSGAVGRLPPAKNLLTLEERIERIHIDGKIEKKKRKML* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5541 257 ProSitePatterns Cyclins signature. 75 106 IPR006671 -
Lja1g5541 257 CDD CYCLIN 74 113 IPR013763 -
Lja1g5541 257 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 108 180 - -
Lja1g5541 257 SMART Cyclin_C_2 142 230 IPR004367 -
Lja1g5541 257 Gene3D - 45 58 - -
Lja1g5541 257 Gene3D - 141 180 - -
Lja1g5541 257 PIRSF Cyclin_A_B_D_E 8 106 IPR039361 -
Lja1g5541 257 PIRSF Cyclin_A_B_D_E 107 181 IPR039361 -
Lja1g5541 257 PIRSF Cyclin_A_B_D_E 180 242 IPR039361 -
Lja1g5541 257 PANTHER CYCLINS 108 180 IPR039361 -
Lja1g5541 257 PANTHER CYCLINS 181 240 IPR039361 -
Lja1g5541 257 PANTHER CYCLINS 19 106 IPR039361 -
Lja1g5541 257 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 181 240 - -
Lja1g5541 257 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 19 106 - -
Lja1g5541 257 Pfam Cyclin, N-terminal domain 45 107 IPR006671 -
Lja1g5541 257 SUPERFAMILY Cyclin-like 141 231 IPR036915 -
Lja1g5541 257 Gene3D - 59 106 - -
Lja1g5541 257 Gene3D - 108 140 - -
Lja1g5541 257 Gene3D - 182 235 - -
Lja1g5541 257 SUPERFAMILY Cyclin-like 35 139 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5541 Lja-Chr1 95959248 95964069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5541 19 238 Core Cell Cycle Gene Families AT4G37490 42.308 1.54e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5541 K21777 - gmx:547919 276.944