Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5539 ATGGATTTGCCAACTGGGTTTAGGTTTCACCCAACTGATGAAGAGCTTATCAGTCAGTACCTTTACAAAAAGGTTACTGACACAAATTTTTCTTCTATAGCCATTGGAGATGTGGATTTGAACAGGTCTGAGCCTTGGGATTTGCCATGTAAAGCTAAAATGGGGGAGAAAGAGTGGTACTTTTTCTGTGTGAAGGACAGAAAATACCCAACTGGGCTAAGGACAAACAGAGCAACTGAAGCAGGGTACTGGAAGGCCACAGGGAAAGATAAAGAGATTTACAGAGGAAAATCTCTCGTTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCACCTAAAGGTGAAAAATCCAACTGGGTCATGCATGAGTACAGGCTTGAGGGTAAATTCTCTGTTCCCAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGCTGTGCAGGGTGTTTCACAAGATTGCAGCAGGAAAGAAGACCAATATTTCTGGGATAATGAGATTGGGATCTTTTGGAAATGAATTGGGTTCCTTTGTTCTTCCACCCTTGACAGAAACACCACCTTCCATTGTTGACAAGACCAAACCACAGCGCGAATCGGCTTACGTGCCCTGCTTCTCCAATCCTATTGATGATGATGATGATCAAAGAATCCAAGGTGGGATCTTTGATTCCTTCAGCAACTCAACTCTTCCAAGAACCCCACTCTCTACTGGTGGTAATTCTTCATTCTTCTCTGCTCAAGGGGTTCAAGCCCCATCAAATTTGCCATCACCGGGTTCTGTGTACAGCATCCAGGACCAGACGATCCTCACAGCTTTACTTGATAACCATGGATCATACTTGAGGAACAGTTTCAATTTCAAACCAGAAGAGGATCAAACAGATGTGAACACTGGATTCTCTTCTTCTGTTGTGACAAATCAGCAGTATCCACCTGCTCCAGCTGCAGCACCAATGGACCTAGCTAGCTTGTGGGGTTACTAA 987 0.4417 MDLPTGFRFHPTDEELISQYLYKKVTDTNFSSIAIGDVDLNRSEPWDLPCKAKMGEKEWYFFCVKDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVPNLPKTAKNEWVLCRVFHKIAAGKKTNISGIMRLGSFGNELGSFVLPPLTETPPSIVDKTKPQRESAYVPCFSNPIDDDDDQRIQGGIFDSFSNSTLPRTPLSTGGNSSFFSAQGVQAPSNLPSPGSVYSIQDQTILTALLDNHGSYLRNSFNFKPEEDQTDVNTGFSSSVVTNQQYPPAPAAAPMDLASLWGY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5539 328 ProSiteProfiles NAC domain profile. 3 153 IPR003441 GO:0003677|GO:0006355
Lja1g5539 328 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 324 - -
Lja1g5539 328 SUPERFAMILY NAC domain 2 153 IPR036093 GO:0003677|GO:0006355
Lja1g5539 328 Pfam No apical meristem (NAM) protein 4 128 IPR003441 GO:0003677|GO:0006355
Lja1g5539 328 Gene3D NAC domain 12 156 IPR036093 GO:0003677|GO:0006355
Lja1g5539 328 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5539 Lja-Chr1 95877597 95879616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5539 1 328 NAC Transcription Factor Family AT5G07680 55.389 7.99e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g5539 NAM 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5539 - - lja:Lj0g3v0171479.1 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5539 1 95877597 95879616 Lja4g2137 4 22917409 22919529 ECH
Lja1g5539 1 95877597 95879616 Lja1g5539 1 95877597 95879616 ECH