Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5534 ATGGCGCTTTTGGGGCTTCTGATCTTGCTGGGATTTCTCTCTCTGGGTTCATCTGTCCATGCGGTTGGTAATAATGGTGGTTGGGTGAATGCCCATGCAACCTTCTATGGAGGAGGCGACGCGGCTGGCACAATGGGTGGAGCTTGTGGATATGGGAATTTATATAGTCAGGGGTATGGGACTAACACTGCTGCTCTGAGCACTGCCTTGTTTAACAATGGTTTAAGCTGTGGGGCATGTTTTGAAATTAAGTGTGTGAATGACCAAAAGTGGTGCCTTCCAAAATCAATTGTGGTCACTGCAACCAATTTTTGCCCTCCAAACAATGCCCTCCCTAACAATGCAGGTGGGTGGTGCAACCCTCCCCTTCAACATTTTGATCTCGCTCAGCCTGTTTTCCAACAAATTGCTCAATACAAAGCTGGAATAGTACCCGTTGCTTACCGAAGGGTCCCTTGCCAAAAGAGAGGAGGCATCAGATTCACAATCAATGGCCATTCTTACTTCAACCTAGTACTAATCACCAACGTTGGTGGTGCTGGAGATGTTCAATCAGTTTCCATAAAAGGTTCAAGAACTAATTGGCAACCAATGTCCAGAAACTGGGGTCAGAACTGGCAAAGCAACTCTTATCTCAATGGTCAGAGCCTATCCTTCAAGGTCACCACTAGCGACGGTCGCACCGTCGTCACTGAAAACGCTGTGCCTGCTGGCTGGTCCTTTGGCCAAACCTTCTCAGGCCATCAATTCCCTTGA 756 0.4788 MALLGLLILLGFLSLGSSVHAVGNNGGWVNAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDQKWCLPKSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFQQIAQYKAGIVPVAYRRVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVQSVSIKGSRTNWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVVTENAVPAGWSFGQTFSGHQFP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5534 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Lja1g5534 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Lja1g5534 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Lja1g5534 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Lja1g5534 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Lja1g5534 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Lja1g5534 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Lja1g5534 251 PANTHER EXPANSIN-A15 9 250 IPR002963 GO:0009664
Lja1g5534 251 Pfam Lytic transglycolase 63 148 IPR009009 -
Lja1g5534 251 SMART dpbb_1 63 148 IPR007112 -
Lja1g5534 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Lja1g5534 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Lja1g5534 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Lja1g5534 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Lja1g5534 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Lja1g5534 251 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Lja1g5534 251 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Lja1g5534 251 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Lja1g5534 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Lja1g5534 251 PANTHER EXPANSIN 9 250 - -
Lja1g5534 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Lja1g5534 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Lja1g5534 251 Gene3D - 15 154 IPR036908 -
Lja1g5534 251 SUPERFAMILY Barwin-like endoglucanases 27 176 IPR036908 -
Lja1g5534 251 Gene3D - 158 250 IPR036749 -
Lja1g5534 251 SUPERFAMILY PHL pollen allergen 155 246 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5534 Lja-Chr1 95611196 95613735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5534 1 250 Expansin Gene Family AT2G03090 80.400 7.97e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5534 - K20628 nnu:104597794 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5534 1 95611196 95613735 Lja4g2138 4 22951568 22953976 ECH
Lja1g2842 1 34215522 34217940 Lja1g5534 1 95611196 95613735 ECH
Lja2g1605 2 15786217 15789106 Lja1g5534 1 95611196 95613735 ECH
Lja2g1171 2 11133267 11134966 Lja1g5534 1 95611196 95613735 ECH
Lja1g5534 1 95611196 95613735 Lja1g5534 1 95611196 95613735 ECH