Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5532 ATGGCCACCGTGACTACACAAGCTTCCGCCGCTATTTTCCGGCCATGTGCTTCTAGGTCGAGGTTTCTTACCGGCTCTTCTGGTAAACTGAACAGGGAAGTAGCTTTTAGGCCAATGGGGTGTCCTCCTTCTACTTCTTTCAAGGTAGAAGCTAAAAAAGGAGAGTGGTTACCTGGCTTGGCCTCCCCAAATTACCTCAATGGCAGTCTTCCTGGTGACAATGGGTTTGATCCTCTGGCACTAGCTGAAGACCCAGAGAACCTGAAGTGGTTTGTTCAAGCAGAGCTTGTGAACGGACGATGGGCCATGTTGGGTGTTGCAGGGATGTTGCTTCCTGAGGTACTCACCAACATTGGACTCATCAATGTCCCCAAATGGTATGATGCTGGGAAAGCAGAGTACTTTGCTTCATCCTCAACCCTCTTTGTGATTGAGTTCATCCTGTTCCACTATGTGGAGATTAGAAGATGGCAGGACATTAAGAACCCTGGCAGTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCCAAATGAAGTTGGCTACCCTGGTGGCATTTTCAACCCCTTGAACTTTGCACCAACTGAAGAGGCCAAAGAAAAGGAACTTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAACACAACGTGACAGGGAAAGGGCCATTTGATAACCTCTTGCAGCACCTCTCTGATCCATGGCACAACACCATTGTCCAAACACTGAGTGGCAACTAA 759 0.4822 MATVTTQASAAIFRPCASRSRFLTGSSGKLNREVAFRPMGCPPSTSFKVEAKKGEWLPGLASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVLTNIGLINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIVQTLSGN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5532 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 252 IPR001344 GO:0009765|GO:0016020
Lja1g5532 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Lja1g5532 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Lja1g5532 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Lja1g5532 252 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5532 Lja-Chr1 95585716 95589428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5532 56 250 Chloroplast and Mitochondria Gene Families AT3G61470 54.726 1.50e-74 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5532 K08910 - pvy:116133502 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5532 1 95585716 95589428 Lja1g5532 1 95585716 95589428 ECH