Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5527 ATGCTCATCATGAATCATCATAAATTATCTTCTTTCGAATATATAGTATATATAAACATTTTCCAATTTTTTTTGTTCATTCCACACTTTGAGATTATCCATTTGCACCTACGTGCCAATTATCTTCATGTGACATTTGCAGGTAAATCAAATTTTGCTACAATTAACTTCCCTTTTTCATACTATGGATTTTGTGATGTTAAAAATGTACTTTCGGTGTGGAACAGCGAAATTGATGCTGGGATTTTTCCAGATAAGCCTGTGTTTTTAACATGCAGTGATGGAGAGAGTGTAAAGGAAATTAAGGAAGATTTGCATTGCATAGAAGATCATCATAAAGTCAGCAATACCAGAATGCTATCATGGAAGACAGTATCTAAGTACTTTTACATGCCAATTTCAGAAGCAGCAAAAGAGCTTAACGTAGGGCTGACCCATTTGAAGAAAAGGTGCAGAGAGTTAGGGATTCAGAGGTGGCCCCATCGGAAGCTAATGAGCCTTCAAGCTCTCATAAAAAACATACAAGAGCAAGGAGATTTGGAGGGACATGATGAAAGAATAAGAAGTGCCATTGAGATATTAGAGAAGGAGAAGAAGATGGTGGAGGAAATGCCAGATTTGGAACTTGAAGAAACTACAAAAAGGCTTAGACAAGCTTGCTTTAAGGCCAACTACAAGAGAAGGAAGCTCATGGTCATGGGATTAATGGAACCTCAATCTTCTTCTATTAGTGGAAGTGCAAGAAGTGAATAA 753 0.3692 MLIMNHHKLSSFEYIVYINIFQFFLFIPHFEIIHLHLRANYLHVTFAGKSNFATINFPFSYYGFCDVKNVLSVWNSEIDAGIFPDKPVFLTCSDGESVKEIKEDLHCIEDHHKVSNTRMLSWKTVSKYFYMPISEAAKELNVGLTHLKKRCRELGIQRWPHRKLMSLQALIKNIQEQGDLEGHDERIRSAIEILEKEKKMVEEMPDLELEETTKRLRQACFKANYKRRKLMVMGLMEPQSSSISGSARSE* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5527 250 ProSiteProfiles RWP-RK domain profile. 109 190 IPR003035 -
Lja1g5527 250 PANTHER PROTEIN RKD1-RELATED 102 243 - -
Lja1g5527 250 PANTHER PROTEIN RKD4 102 243 IPR044607 GO:0003700
Lja1g5527 250 Pfam RWP-RK domain 120 167 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5527 Lja-Chr1 95416417 95418040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5527 114 234 AtRKD Transcription Factor Family AT1G18790 60.976 1.52e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja1g5527 RWP-RK 3.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5527 - - pvu:PHAVU_009G186900g 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5527 1 95416417 95418040 Lja1g5527 1 95416417 95418040 ECH
Lja4g2146 4 23005411 23006786 Lja1g5527 1 95416417 95418040 PCT