Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5525 ATGGGGGAATACATGGTTTTGTCTATTGACACTCTTGAGAAAGCTTCTGCAAGTTTGCAACCACATCATGGTGTTGATGCCCAAGGATCATTAATTGAGGGTGCAACTCATGTGAAAGATAATGGCCAATGTGATGCACTCAAAGAAGAAAAAGAAAACCTTATCCAGATTCTAGAATGTCGCATATGCTTGGAGGAGGATACCCTTCAAAATTTGGACATACCATGTGCTTGTAGCGGAACGATGAAGTTTGCTCATACAAGATGTGTTCAACAATGGTACTATGAGAAGGGTGATACAATTTGTGAGATTTGCTGTCAGCCATTCAAACGCGGTTATACTGCTACATCACCTTTCTACCATCCCAGAGATACTTCAGCTAATATCAGGGAGGACTTGATCTCAAATACTCATTTGGATTTTGAAGATCATCGTCGTTTCACGATTGCAGTTGTGGAGCATCAAGCAATCGAAGCTGAGCATGGAGATTATGTATATACTGGAATTTATGGAACTACATTGCTTCGGTTTACTGCTCTAACTTTAATGGTTCTTTTACTTCTAGAGAATGTGGTTGGCCTCTTCAACTCTGATGCCGATAAATCTTTAACCTATGTTACTTTTGTATTTGTTCGTGCTGCAATTGTTATCCTTCCTTGCTATCTTATGGCCAGGATCATTCGCATAATCAACCACCGAAGGCAAGGACAGGTTACTACCCCATTATTATTGTACTTTTGA 741 0.3995 MGEYMVLSIDTLEKASASLQPHHGVDAQGSLIEGATHVKDNGQCDALKEEKENLIQILECRICLEEDTLQNLDIPCACSGTMKFAHTRCVQQWYYEKGDTICEICCQPFKRGYTATSPFYHPRDTSANIREDLISNTHLDFEDHRRFTIAVVEHQAIEAEHGDYVYTGIYGTTLLRFTALTLMVLLLLENVVGLFNSDADKSLTYVTFVFVRAAIVILPCYLMARIIRIINHRRQGQVTTPLLLYF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5525 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 111 IPR013083 -
Lja1g5525 246 CDD RING_CH-C4HC3_MARCH 60 105 - -
Lja1g5525 246 Pfam RING-variant domain 60 105 IPR011016 GO:0008270
Lja1g5525 246 PANTHER OS11G0600700 PROTEIN 1 239 - -
Lja1g5525 246 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Lja1g5525 246 ProSiteProfiles Zinc finger RING-CH-type profile. 52 112 IPR011016 GO:0008270
Lja1g5525 246 SUPERFAMILY RING/U-box 59 110 - -
Lja1g5525 246 Pfam Protein of unknown function (DUF3675) 112 227 IPR022143 -
Lja1g5525 246 SMART ringv_2 59 106 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5525 Lja-Chr1 95331331 95348894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5525 59 105 C3H Transcription Factor Family AT2G37950 36.000 6.89e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5525 - - gmx:100805050 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5525 1 95331331 95348894 Lja1g5525 1 95331331 95348894 ECH