Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5520 ATGAAGAAGCGACAGGTGGTGGTGAAAAAACTCTCTAACACTACATCTTCGGTGATGAGGAACATTAGATATGGGGAGTGCCAGAAGAATCACGCAGCGAGTATCGGAGGATACGCGGTGGACGGTTGCAGGGAGTTCATGGCAAGTGCAGGGGATGAAGCTCTTACGTGTGCCGCTTGTGGCTGTCACCGGAACTTTCACAGAAGGGAAGTGCAAACTGAGGTTGTGTGTGAGTACTCTCCACCTAATTAA 252 0.5 MKKRQVVVKKLSNTTSSVMRNIRYGECQKNHAASIGGYAVDGCREFMASAGDEALTCAACGCHRNFHRREVQTEVVCEYSPPN* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5520 83 Pfam ZF-HD protein dimerisation region 22 71 IPR006456 -
Lja1g5520 83 PANTHER MINI ZINC FINGER PROTEIN 3 2 83 - -
Lja1g5520 83 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 70 IPR006456 -
Lja1g5520 83 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 83 - -
Lja1g5520 83 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5520 Lja-Chr1 95179515 95180236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5520 1 83 Zinc finger-homeobox gene family AT1G18835 81.176 8.50e-45 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja1g5520 ZF-HD_dimer 2.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5520 - - gmx:100785967 156.762