Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5518 ATGGTGAGGCCACCTTGCTTTGAAAATTTGGGTACTAAGAAAGGGCCTTGGACTCCAGAGGAGGACATCATCTTGGTGTCTTACATTCAAGAACATGGACCAGGGAATTGGAGATCAGTTCCCAAAAACACAGGTTTGATGAGATGCAGTAAAAGCTGCAGACTTAGATGGACTAACTATCTTAGACCGGGTATCAAACGAGGCAATTTCACTGATCATGAAGAGAAAATGATAATCCACCTCCAAGCCCTTTTGGGCAACAGATGGGCTGCAATAGCTTCCTACCTTCCACAGAGAACAGACAATGACATAAAAAACTATTGGAACACCCATTTGAAGAAAAAGCTGAAGAAGAATCAAAAAGGGGATGGAGATGGTGAAACCAATGAAGGACACTCTATTTCACAGGAAAAGGGTCAATGGGAGAGAAGGCTCCAAACAGATATCCACATGGCCAAACAGGCCTTATGTGAGGCACTGTCCCTTGACAACAACAAGCCAACCCTTATTTTGCAAGACACCAATAACAATACCACAACTCAATCACCCACATACGCTTCAAGCGCTGAGAACATAGCAAGATTGCTAAAAAACTGGATCAAGAAACCGCCACCAAATGAAACAAATTCAGGTAATTCCTTCAGCAAATTGGTAACTACAGGGTCCAGTTCTAGTGATCAAGGGGCACAGAGCAGCACCACATGCGCAACCGATCACCATTTCGACTCGTTCTTCAGCTTTAACTCTGATCGTTCTCGATCGGTGTCAGCTGAAGAAAACGCTAACCTTGCAACTGATTTTGGCTTCTTCGAAGAAGAAACCAAGCCGAACCTTCAGGAAACCACGCAAGTCCCGATCACGTTGCTGGAGAAGTGGCTTTTTGATGAAGATCTAATGAACATGCCACTGCAGGAAAGTACAGCAGGGCTGTTTTAG 936 0.4444 MVRPPCFENLGTKKGPWTPEEDIILVSYIQEHGPGNWRSVPKNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKNQKGDGDGETNEGHSISQEKGQWERRLQTDIHMAKQALCEALSLDNNKPTLILQDTNNNTTTQSPTYASSAENIARLLKNWIKKPPPNETNSGNSFSKLVTTGSSSSDQGAQSSTTCATDHHFDSFFSFNSDRSRSVSAEENANLATDFGFFEEETKPNLQETTQVPITLLEKWLFDEDLMNMPLQESTAGLF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5518 311 MobiDBLite consensus disorder prediction 118 140 - -
Lja1g5518 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g5518 311 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja1g5518 311 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 300 - -
Lja1g5518 311 MobiDBLite consensus disorder prediction 115 140 - -
Lja1g5518 311 Gene3D - 13 66 - -
Lja1g5518 311 CDD SANT 16 61 IPR001005 -
Lja1g5518 311 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja1g5518 311 MobiDBLite consensus disorder prediction 203 234 - -
Lja1g5518 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g5518 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Lja1g5518 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 300 - -
Lja1g5518 311 MobiDBLite consensus disorder prediction 200 234 - -
Lja1g5518 311 CDD SANT 69 111 IPR001005 -
Lja1g5518 311 Gene3D - 68 146 - -
Lja1g5518 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g5518 311 SMART sant 66 114 IPR001005 -
Lja1g5518 311 SMART sant 13 63 IPR001005 -
Lja1g5518 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5518 Lja-Chr1 95075222 95077289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5518 1 311 MYB Transcription Factor Family AT5G62470 51.359 6.40e-108 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g5518 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5518 K09422 - gmx:100794319 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5518 1 95075222 95077289 Lja1g5518 1 95075222 95077289 ECH