Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5511 ATGGAAGGAGGTGATGATTTCCACCACCACTTCCATCACCACCACCACCACCGACAAAACTTCCCACTCCAACTCCTTGAGAAGAAAGAGGATCAAGAAGCCGCATCTTGCTCCCCCTCATCACCTTCATCACTAGCCATCATCTCCCCCGAACCTGCCACCACTTCAAACCAACTCGCCGCCGCCGAGGCGGAACCCTCCAACAGCAAAAAGCCTCCGCCCAAGAGAGCCACCACCAAAGACCGGCACACAAAGGTAGACGGCCGCGGCCGCCGCATCCGTATGCCGGCCCTCTGCGCTGCCAGGGTCTTCCAGCTCACCCGGGAGCTCGGCCACAAGTCCGACGGTGAAACCATCGAGTGGCTCCTCCAGCAGGCTGAGCCCTCGGTAATCGCCGCCACTGGAACCGGCACCATCCCCGCAAACTTCACATCCCTCAACATATCCCTAAGAAGCTCAGGCTCATCCATGTCCATCCCCTCCCACCTCCGATCCTCCTACTTCAGCCCTAACTTCTCCCTCCCGCAGCGTCGGCCGACCTTCTTCGAAAACACTTCCACCACCACCGCCGCTGCTGCATCCACCACAACCTTTCTCAATTTCCAACCCAACAGCCTGAACAACATGTTTCAAGCCAAGCATGAAGGGCTAGATTTATCCGAGAAACCGAGACACGGCGCCGAGCAAGACTTGTTATCACCATCTTCATCTTCATCCTCATCCTCATCCCAGCAGCAGCAGCATCAAGTAGGAAGCTACTTTCTCCAATCAAGCAGCGTCGGGACGATTCCGGCGAGCCACGCACAGATTCCAGCTAGTATATGGATGCTGGCGAATTCTAATAACAACCAAGGTATGAGTGGTGGTGATTGGGTTAACAATAGTGGTTTGTATAGAGGAGCTTTGCAAAGTGGATTGCATTTCATGAATTTTCCAACACACATGGCCTTGTTACCTGGTCAACAATTAGGGAGTGGAATTGGTGGAACTGGGAATGTAAATGAAGGACATGTGAGCATGCTGGCAGGGCTGAACCCTTACCGGCCGGTGATCGGCGTCTCCGAGTCTCAGGCGAGTGGATCACAATCACATCACGATGGCGGCGGTGAGGACGATCCTCGTGAGAACAACAATCATCATCATCATCACTCATAG 1155 0.5429 MEGGDDFHHHFHHHHHHRQNFPLQLLEKKEDQEAASCSPSSPSSLAIISPEPATTSNQLAAAEAEPSNSKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSIPSHLRSSYFSPNFSLPQRRPTFFENTSTTTAAAASTTTFLNFQPNSLNNMFQAKHEGLDLSEKPRHGAEQDLLSPSSSSSSSSSQQQQHQVGSYFLQSSSVGTIPASHAQIPASIWMLANSNNNQGMSGGDWVNNSGLYRGALQSGLHFMNFPTHMALLPGQQLGSGIGGTGNVNEGHVSMLAGLNPYRPVIGVSESQASGSQSHHDGGGEDDPRENNNHHHHHS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5511 384 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 380 IPR005333 GO:0003700
Lja1g5511 384 MobiDBLite consensus disorder prediction 35 64 - -
Lja1g5511 384 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 12 380 - -
Lja1g5511 384 MobiDBLite consensus disorder prediction 230 250 - -
Lja1g5511 384 MobiDBLite consensus disorder prediction 1 90 - -
Lja1g5511 384 Pfam TCP family transcription factor 78 231 IPR017887 -
Lja1g5511 384 MobiDBLite consensus disorder prediction 224 250 - -
Lja1g5511 384 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
Lja1g5511 384 MobiDBLite consensus disorder prediction 355 384 - -
Lja1g5511 384 MobiDBLite consensus disorder prediction 20 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5511 Lja-Chr1 94899222 94900886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5511 54 376 TCP Transcription Factor Family AT3G47620 44.498 8.34e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja1g5511 TCP 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5511 - - pvu:PHAVU_003G190900g 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5511 1 94899222 94900886 Lja4g2154 4 23110891 23112945 ECH
Lja1g5511 1 94899222 94900886 Lja1g5511 1 94899222 94900886 ECH