Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5505 ATGGACACAGTCAAGGTTTTGAAAGGTTATGGCAAAGTGGAGGAAGAAGAACACAACCACCACCACCACCACAACCTCGAAGACCAACAACAACGCAATCAACACCACCACCGTAAAGCTTCCACCGCCATAATCTCCATCCTCGCCATCCTCTTCTTCACTCTCGCCTTGGCTTTCACCCTCGCCACCCTCCTCCACCACACCACCACCACCACCAAGCCACCGCACAAACAACAACAACCTCTCAACTCAGCCGACTCCATCCGCACCGTCTGCAACGTCACTCGCTTCCCGGACTCCTGCATCGCCGCCGTCTCCTCCTCCAACGACCACCCCACCGACCCACAATCCATCCTCACCCTCTCCCTCCGCGCCTCCGTGGACGAGCTCGCCTCCGTCGCCTCCTCGCTCGGAGTCAAGGCCTCAAGTTCTAACGGCCAGGGGGTTGCCGATTGCAAGGACCAAGTAGACGACGCGCTGAGTCGACTCAACGACTCGCTGTCAGCGATGGCGGTGGTTCCCGGCGGTGTGACGCTGACGGATGCGAAGATCAGCGATATTCAGACGTGGGTGAGCGCGGCGGTGACGGATCAGCAGACTTGCCTTGATGGGTTGGAGGAGGTTGGGTCTGTGGTGGTTGAAGAGGTGAAGAATATGATGAAGAAATCAAGTGAGTACGTTAGCAACAGCTTGGCCATTGTTGCTAACATACGCACCTTGTCACAACAATTCCACATGCCACTCCATTGA 750 0.5667 MDTVKVLKGYGKVEEEEHNHHHHHNLEDQQQRNQHHHRKASTAIISILAILFFTLALAFTLATLLHHTTTTTKPPHKQQQPLNSADSIRTVCNVTRFPDSCIAAVSSSNDHPTDPQSILTLSLRASVDELASVASSLGVKASSSNGQGVADCKDQVDDALSRLNDSLSAMAVVPGGVTLTDAKISDIQTWVSAAVTDQQTCLDGLEEVGSVVVEEVKNMMKKSSEYVSNSLAIVANIRTLSQQFHMPLH* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5505 249 Pfam Plant invertase/pectin methylesterase inhibitor 87 233 IPR006501 GO:0004857
Lja1g5505 249 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 236 IPR006501 GO:0004857
Lja1g5505 249 PANTHER PECTINESTERASE 1-LIKE 4 244 - -
Lja1g5505 249 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 86 237 IPR035513 -
Lja1g5505 249 SMART PMEI_2 83 233 IPR006501 GO:0004857
Lja1g5505 249 MobiDBLite consensus disorder prediction 15 35 - -
Lja1g5505 249 Gene3D Invertase/pectin methylesterase inhibitor family protein 83 238 IPR035513 -
Lja1g5505 249 PANTHER PECTINESTERASE 4 244 - -
Lja1g5505 249 CDD PMEI-like_3 90 239 - -
Lja1g5505 249 MobiDBLite consensus disorder prediction 15 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5505 Lja-Chr1 94718396 94719500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5505 1 249 Carbohydrate Esterase AT1G53840 33.835 1.46e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5505 - - gmx:100789567 210.69