Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5503 ATGTCTAGCAGGAGATCACGTTCAAGGCAAACAAGTAGCTCAAGGAATATCACCGATGATCAGATCCATGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCAGAGATTCGTGAGAGGCGCTCTGACAAGGTTTCAGCATCAAAGGTCTTGCAAGAGACATGCAACTACATTAGAAGCTTACACCGGGAAGTTGATGATCTGAGTGAGCGTTTGTCAGAGCTCTTGGCTACAACAGACACAGCACAGGCTGCAATCATTAGAAACTTGCTTATGCAATAG 279 0.4516 MSSRRSRSRQTSSSRNITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5503 92 Coils Coil 57 77 - -
Lja1g5503 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Lja1g5503 92 Gene3D - 18 88 IPR036638 GO:0046983
Lja1g5503 92 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5503 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Lja1g5503 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lja1g5503 92 CDD bHLH_AtPRE_like 17 77 - -
Lja1g5503 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Lja1g5503 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5503 Lja-Chr1 94519021 94520673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5503 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.968 1.66e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g5503 HLH 4.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5503 - - gmx:100527636 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1626 2 16171823 16174051 Lja1g5503 1 94519021 94520673 ECH
Lja2g1127 2 10751933 10753171 Lja1g5503 1 94519021 94520673 ECH
Lja1g5503 1 94519021 94520673 Lja1g5503 1 94519021 94520673 ECH