Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5502 ATGATTGTAACTGTGCATTTCCTATTACATTGTTTGGTTTCTCATGTTCTTCTCTCTAAAGTTTGCAAAAGTACTAACAATCAGCATCGAGGAACTAGTGTTATAAAACCTTCTGGTAGTAGCATCCATTCATTGGCTTATTTGAGTACAAAAGTGCATGGATACCATGATGAGGGTAAACATAAGACTCTCCCTACTCCTAAGTCTGAAGGTGACATACTTTCCTCCTCATATTTAAAAGCCTTCACATATAATGATCTAAAGAATGCTACAAGAAACTTTCGTCCTGCTAGTCTGATAGGAGAAGGGGGATTTGGTCACGTCTACAAGGGGTGGGTTGATGAACAATCCCTTGGGGCTTCAAGTCCTGGATGTGGAATGATTGTAGCTGTGAAGAAGCTTAAACCTGAAGGTTTTCAAGGCCACAAGGAGTGGCTGTCCGAAGTCAATTATCTTGGAAAACTTCGTCATCCAAATCTTGTGAAGCTCTTTGGATACTGCTTGGATGGGGATAAACGACTTCTTGTGTATGAGTACATGCCCAAAGGCAGCTTGGAGAATCATCTATTTTGCAGGGGTGGCCGGCCACTTCCTTGGGCCACAAGGATGAAAGTTGCCATTGGTGCTGCTCAAGGCCTTGTCTTCTTGCATGATTCTGAGCAACCAGTTATCTACCGAGATTTCAAGGCTTCTAATGTTTTAGTAGATTTGGAATTTAATGCAAAACTGTCAGACTTTGGTTTCGCTAAAGCAGGGCCGACTGGTGATCACACACATGTTTCTACTCGAGTTCTAGGTACTGAAGGCTATGCAGCTCCTGAATATATTGCAACAGGTCACCTGACGGCAAAGTGTGATGTCTTCAGCTTTGGGGTTGTGCTATTGGAACTACTTTCCGGGCGCCGTGCTGTCGATAAAACAAAGCCTCGAGTGGAGCAAAATCTGGTGGGCTGGGCAAGGCCCTATTTGGGTGACAAGAGGAAGTTGTTCCGGATCATGGACACAAAGTTGGAAGGGCAGTACCCTCAGAGAGCAGCATATGGAGCTGCAATTCTTGCATTACAATGTATTAGTGAGGCCAAAACTAGACCACAAATGTCTGAGGTTTTGGCTACATTGGAACAGCTTCCAGCTATGAGACATCCCGTTTCAGCCAGCCCTCGTCGGAAGTCCATGTCAAGCCCCAATGCAAAATCCTCTTTGGTACATAATCATCATCATGATCATCATTCAGTAGAAAGGAAGTCTGTTTCTGGTTACTTCAGTGAAATCCCGGGTAGATCTTCTATGACATCCCCAGCAAAGTCATCATTTATGCAATCCCCCAGAAGTGTAGACCACCTTATTGTTCTTGATTCTGTTAGTTGA 1368 0.4401 MIVTVHFLLHCLVSHVLLSKVCKSTNNQHRGTSVIKPSGSSIHSLAYLSTKVHGYHDEGKHKTLPTPKSEGDILSSSYLKAFTYNDLKNATRNFRPASLIGEGGFGHVYKGWVDEQSLGASSPGCGMIVAVKKLKPEGFQGHKEWLSEVNYLGKLRHPNLVKLFGYCLDGDKRLLVYEYMPKGSLENHLFCRGGRPLPWATRMKVAIGAAQGLVFLHDSEQPVIYRDFKASNVLVDLEFNAKLSDFGFAKAGPTGDHTHVSTRVLGTEGYAAPEYIATGHLTAKCDVFSFGVVLLELLSGRRAVDKTKPRVEQNLVGWARPYLGDKRKLFRIMDTKLEGQYPQRAAYGAAILALQCISEAKTRPQMSEVLATLEQLPAMRHPVSASPRRKSMSSPNAKSSLVHNHHHDHHSVERKSVSGYFSEIPGRSSMTSPAKSSFMQSPRSVDHLIVLDSVS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5502 455 Pfam Protein tyrosine and serine/threonine kinase 99 320 IPR001245 GO:0004672|GO:0006468
Lja1g5502 455 ProSitePatterns Protein kinases ATP-binding region signature. 100 133 IPR017441 GO:0005524
Lja1g5502 455 PANTHER OS01G0588500 PROTEIN-RELATED 40 405 - -
Lja1g5502 455 Gene3D Transferase(Phosphotransferase) domain 1 180 392 - -
Lja1g5502 455 Gene3D Phosphorylase Kinase; domain 1 66 179 - -
Lja1g5502 455 PANTHER BNAC02G17010D PROTEIN 40 405 - -
Lja1g5502 455 SUPERFAMILY Protein kinase-like (PK-like) 78 399 IPR011009 -
Lja1g5502 455 CDD STKc_IRAK 100 376 - -
Lja1g5502 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Lja1g5502 455 MobiDBLite consensus disorder prediction 381 417 - -
Lja1g5502 455 ProSiteProfiles Protein kinase domain profile. 94 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5502 Lja-Chr1 94489408 94493756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5502 80 373 Glycoside Hydrolase AT3G07070 54.027 1.45e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja1g5502 PK_Tyr_Ser-Thr 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5502 - - lang:109338813 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5502 1 94489408 94493756 Lja4g2160 4 23201069 23204246 ECH
Lja1g5502 1 94489408 94493756 Lja1g5502 1 94489408 94493756 ECH