Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5500 ATGGGCACTGATTCGATGGGAAGCGAAGGGTACTCTCCGTTGAAGGATTTGAGATTGGAAATTGAAGTAAAGGAGAGAACTTTCTCTCTTTGCTTTTGGGTTTACTTGATGAACTCCACCACATTCCCTGCTACCATTATTCAACAGGTCTACTCCGATATATCTCAAAGTGCTCCTTTTCTTGTTATTAATGAGAATAAGAGAATCAATATTTTACCAGTTCTTCATTTACATGAGGAAGCTCCTGATATTGGCAATATAAGTTCCTGGACAGAGGTTCCACATGCAACTGCTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAAATCATATCCAGCTTCAGATTAATGGAGAGATTGTAGGAAAAAAGTCTCTGTCTTCCTTATTAAATAAGGAACCTAATTCAAGTGATTTGAGGAAAATAACTTTGGCCAATGTTGGTGGTGATGGAAATAGTGTGCATGGTTATGTGCACAATTTTGAAGTATTCCCTATTATTTCTCCTGTCAAGGATCACCATTTAAAGAACCCTCCTCTGAAGCTAACAATTGATGAATCATCTGCATCTGAGATTGAAGAAGAAAGTGACGGTGTTTGGGGCATTGTTGGTGGCAAGGCATCTTGTCGCAGGAACTTCTCCTTGGATGTTGTTCTATCAGATGGCTTTGGAGATCCCGTAGATAAGGAGAATGAGGTTTTTGCTTCACTTTTGTATGCTGACACCCGGGCTCCGGTGGAGAAAACAATTGATGAAGAAGCACCACTTTTGGTTAGCTATGATGGAATTGAATTTTCTTCTGGTGAAAGACCAAGTAAAATTTTACTGGGGTGTGCATCATTTAAGCTCAAAATATCTCAGCTTTCTTCTAAGTGTGATAACAGGTTATTCCTCATCAGATTTTGTGTTCCAAAATTAGGAGATTTTCCTTTTCTTGAGACATTCAGCCGTCCAATTCGATGCATCTCTAGGAGCCGCAACACTAAATTATCCACTCTGGTGTGGAAAAGGCCAACTTCTGCTCTTCATCAACTTAGTTTATCACAATCTTCAGCAATGGTTGATGAGTCTTTGGAACATATGCAATGTGGTCTTGAATCAACAGCCAATCCATTAGTGAAGCGGTTTAGAGTTGGACATGACAAGATATCTGTATCAGTGCAACCTGATGAGGAATGTAATTCTCATGTATGGACTGCTAATCAGAATGAGTTTCCAACCAGCATGGATGCGAGGCCTACTAAATTTGATGAAGCCGATGACTCTCCATCTGACTCAGAGAGTATAGGGGAGAGAAATTCACCTTCGAATAATATGGCAAGTAGAAGATATCCAATATCGGATATGACCATTTTCAAATACTGCCTGGCAGGCTTGGCTGAGAGATCTCTCATGCTAAAGGAAATAGCTTTCTTTTCTTCTGGCAACGAAATTTTGGAGTTGGCTCATCACGTGTCACTCTATTCAGGATGTTCACACCATGGAAACCAAATATTACTAGCCAAGAGATTGATAGAAGATGGAACTAATCTTTGGAAGGTATTGTCTCCAAACAACCACCACGTTTCATGGGAGAGTGCAGTCTATGAGATTGAAGAGAAATTCATGAAGATTGCTTCTTGTGATTCAAGATCTCTCTCACATCAGGACCTAGAGCTTCTGAGAAGGATTGCTGGATGTCAAGAGTATCTGACACAGGAGAGCTTTGAGAAATTGTGGTGCTGGGTGTACCCAGTAGCTTTTACAATATCGAGGGACTTGATCAATCCTATCTGGAATTCCGTAGCACCTAAATGGATAGAAGGATTGATTACTAAGGAGGAGGCCGAAGCTTCACTTCGAGGTCCTGCAGGATTTCAAGAACCCGGTACCTTCACACTCCGATTCCCCACTTCAAGAAGCTGGCCCCACCCAGATGCAGGTTGCCTAATTGTGACTTACGTTGGCAATGACTACAAAATTCACCACAGATTACTTTCTATGGATCATGCTTATGGCTCTGGTGATAAAAGAACTGACATGAAACCGTTGCAAGATATGCTGCTGGAAGAACCTGAACTGTCTCGGTTGGGAAGGATAATAAGAAGTCATTAA 2115 0.4109 MGTDSMGSEGYSPLKDLRLEIEVKERTFSLCFWVYLMNSTTFPATIIQQVYSDISQSAPFLVINENKRINILPVLHLHEEAPDIGNISSWTEVPHATADFEFPLEKWVHVGCEVCPNHIQLQINGEIVGKKSLSSLLNKEPNSSDLRKITLANVGGDGNSVHGYVHNFEVFPIISPVKDHHLKNPPLKLTIDESSASEIEEESDGVWGIVGGKASCRRNFSLDVVLSDGFGDPVDKENEVFASLLYADTRAPVEKTIDEEAPLLVSYDGIEFSSGERPSKILLGCASFKLKISQLSSKCDNRLFLIRFCVPKLGDFPFLETFSRPIRCISRSRNTKLSTLVWKRPTSALHQLSLSQSSAMVDESLEHMQCGLESTANPLVKRFRVGHDKISVSVQPDEECNSHVWTANQNEFPTSMDARPTKFDEADDSPSDSESIGERNSPSNNMASRRYPISDMTIFKYCLAGLAERSLMLKEIAFFSSGNEILELAHHVSLYSGCSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVSWESAVYEIEEKFMKIASCDSRSLSHQDLELLRRIAGCQEYLTQESFEKLWCWVYPVAFTISRDLINPIWNSVAPKWIEGLITKEEAEASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCLIVTYVGNDYKIHHRLLSMDHAYGSGDKRTDMKPLQDMLLEEPELSRLGRIIRSH* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5500 704 ProSiteProfiles Src homology 2 (SH2) domain profile. 606 704 IPR000980 -
Lja1g5500 704 SUPERFAMILY SH2 domain 600 694 IPR036860 -
Lja1g5500 704 MobiDBLite consensus disorder prediction 418 434 - -
Lja1g5500 704 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 8 701 - -
Lja1g5500 704 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 172 IPR013320 -
Lja1g5500 704 MobiDBLite consensus disorder prediction 411 448 - -
Lja1g5500 704 Gene3D SH2 domain 592 702 IPR036860 -
Lja1g5500 704 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 8 701 IPR001217 GO:0003700|GO:0006355|GO:0007165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Lja1g5500 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5500 - - gmx:100803169 1144.03