Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5499 ATGGAAAATGGAGGAAACACACAGAATGAACCTGCGAGATTCTGGACTCAAGCAAACGCGCTTCTCAGGAAGAATTTAACCTACCAGAAGCGAAACGTGAAGACGACGGTTCGCCTAATCTTGTTCCCTTTCGCGGTGTGTCTGTTGCTGGTGCTCATTCAAAAGCTGCTTGATAACCAACTTGACAAGGCTAAATACACGTGTGGCTGCACGTGTGAAAATTCACAAGGGGAGGGTCAGTGTGTAGAGGAAGTGTGTGGGATTGAGTATTCGGATTTGGATCAAGTTAGCACGTGTTCCGTTCCGACCCCTCCCGAATGGGCTCCTTTGATGCAATTTCCCGCTCCGAAATACCGAGCTGTGAGAACGGAGTTTCTTCCGAATTCTGATTTTCCAAATTCGTCCTGTAGAACCGGTGGCTCGTGCCCGGTTACTATGTTCTTCACCGGCAATAACCAGTCACTAGGACAAATTTTGTATGGGAATATGATCCCAAGTACCCTTAACATGAATAACTCTGATACTGTGGGTAGTTTGGCATCAAATGTCATGGGATCAGCATCCTACACAGAGAACACCAATTTTCTGGAACCTGCTTTCTATTCAGATCTTCCCATTTATTATCTACAAAGCCAGTGCACGCAGCAGAACTCTACATTCTCCATTCCTGTCCAAATATCAACAACTACCAGGCAGCAAGAGGTAAGATGTGCTCAAGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTGAACAGTGAGCTATTTAAAGGTTATAGAAAAGGTAACACACAGAGACAGATCAATGAGATAGCTGCAGGTTATGATTTTCAAAATTCAAATGGGAATATATTTAATGTCACCATATGGTACAACTCAACCTACAAAAATGACACTGGCTCTAACGCCATTGCATTGGCGCGTATTCCTCGTTCTGTAAATCTGGTATCAAATGCCTACCTTCAATTTCTGCTGGGGTCTGGTACCAAAATGTTCTTTGAGTTTGTGAAGGAAATGCCTAAACCTGAGACTCAAAATAAGTTTGATTTGTCTTCTCTTTTGGGTGCTCTCTTCTATACATGGATTATCCTGCAACTTTTCCCCGTTGTCCTGACATCGCTAGTTTATGAGAAACAACAAAAATTAAGGATCATGATGAAAATGCATGGTCTGGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTTCTTGCCATATCTGTTATCTACATCTTGTGTTTCGTGATATTTGGCTCAGTCATAGGGTTGAAATTCTTCACAAAGAATGACTACAGTATCCAATTCGTGTTTTATTTCCTCTATATAAATTTACAAATTTCACTGGCATTTCTATTGGCGTCTCTGTTCTCAAATATTAAGACAGCTACAGTAATTGCCTATATGGGTGTGTTTGGAACTGGGTTATTAGGTGGCTTTCTTTTCCAATTTTTGATTCAAGAGGAATCGTTTCCAAGAGGGTGGATCATTGTTATGGAGTTATATCCAGGGTTTTCCTTATTTCGTGGGTTATATGAATTTTCACAATCTTCCTTCACTGGGGATGCTTTGGGGACTCATGGTATGCGGTGGGGAGATTTGAGTGATAGTACAAATGGCATGAAAGAGGTCTTTATTATCATATTCGTGGAGTGGCTTTTGGCTCTTATTTTCGCTTATTACATGGATCAAGTTTTGACATCAGGAAGTGGAAAAAGCCCTCTTTTTTTCTTGAAAGGATTTCAGAAAAATCGTAGCTCATCTTTTCGGAAGCTTAGTCTCCAAAGGCAGGAGTCTAAAGTTTTTGTTGATATGGAGAAACCTGATGTTAATCAAGAGAGGGAGAAGGTGGAGCAGCTAATACTTGAACCAACTTGTAATCATGGAATTGTATGTGACAACCTGAGAAAGGTCTATCCGGCGAGGGATGGTAACCCAGCGAAATTCGCAGTGAGAGGATTGTCCCTTGCTCTACCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAACATGATGATTGGTCTCACGAAGCCATCCTCTGGTACAGCACTTGTTCAAGGTCTTGACATAAGAACTGATATGGGTGGGATATATACTAGTATGGGTGTATGCCCACAACATGACTTGCTGTGGGATGTTTTGACTGGAAGAGAGCACCTGCTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTAACACAAGCAGTGGAAGAATCTTTGAAAAGTGTAAATCTTTTTCACGGAGGAGTTGCTGATAAACAAGCTGGAAAATACAGCGGCGGAATGAAGAGGAGGCTTAGTGTAGCAATTTCATTAATCGGAGATCCTAGAGTTGTTTATATGGATGAGCCCAGTACTGGATTAGACCCAGCATCAAGAAACAGCTTATGGAATGTTGTTAAGCGTGCTAAACAAAATCGCGCAATCATTCTCACAACACATTCCATGGAAGAGGCAGAAGTCCTATGTGATCGGTTGGGAATATTTGTAGATGGTAGCTTGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGGCAGGTATGGAGGAACTTATGTGTTCACGATGACAACATCTGTGAATCATGAAAAGGATGTTGAGAACTTGGTGCAGAAGCTTTCCCCAAATGCTAACAAGATTTATCATATCTCTGGTACTCAGAAGTTTGAGTTGCCAAAAGACGATGTTAGAATAGGGAGTGTATTCCAAGCTGTTGAAACTGCAAAGAGAAACTTCACAGTTTCTGCATGGGGTTTAGCTGACACCACACTGGAAGATGTCTTCATTAAGGTTGCACGTGGGGCTAAGGCATTTGACATCTTGTCATAA 2859 0.4166 MENGGNTQNEPARFWTQANALLRKNLTYQKRNVKTTVRLILFPFAVCLLLVLIQKLLDNQLDKAKYTCGCTCENSQGEGQCVEEVCGIEYSDLDQVSTCSVPTPPEWAPLMQFPAPKYRAVRTEFLPNSDFPNSSCRTGGSCPVTMFFTGNNQSLGQILYGNMIPSTLNMNNSDTVGSLASNVMGSASYTENTNFLEPAFYSDLPIYYLQSQCTQQNSTFSIPVQISTTTRQQEVRCAQGLRLWRNSSSEVNSELFKGYRKGNTQRQINEIAAGYDFQNSNGNIFNVTIWYNSTYKNDTGSNAIALARIPRSVNLVSNAYLQFLLGSGTKMFFEFVKEMPKPETQNKFDLSSLLGALFYTWIILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISVIYILCFVIFGSVIGLKFFTKNDYSIQFVFYFLYINLQISLAFLLASLFSNIKTATVIAYMGVFGTGLLGGFLFQFLIQEESFPRGWIIVMELYPGFSLFRGLYEFSQSSFTGDALGTHGMRWGDLSDSTNGMKEVFIIIFVEWLLALIFAYYMDQVLTSGSGKSPLFFLKGFQKNRSSSFRKLSLQRQESKVFVDMEKPDVNQEREKVEQLILEPTCNHGIVCDNLRKVYPARDGNPAKFAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPSSGTALVQGLDIRTDMGGIYTSMGVCPQHDLLWDVLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNSLWNVVKRAKQNRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSVNHEKDVENLVQKLSPNANKIYHISGTQKFELPKDDVRIGSVFQAVETAKRNFTVSAWGLADTTLEDVFIKVARGAKAFDILS* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5499 952 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 10 952 - -
Lja1g5499 952 Gene3D - 623 895 IPR027417 -
Lja1g5499 952 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 10 952 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lja1g5499 952 Pfam ABC-2 family transporter protein 269 558 - -
Lja1g5499 952 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 867 IPR003439 GO:0005524
Lja1g5499 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 858 IPR027417 -
Lja1g5499 952 SMART AAA_5 660 843 IPR003593 -
Lja1g5499 952 Pfam ABC transporter 652 796 IPR003439 GO:0005524
Lja1g5499 952 CDD ABC_subfamily_A 634 855 - -
Lja1g5499 952 ProSitePatterns ABC transporters family signature. 769 783 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5499 Lja-Chr1 94408899 94418782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5499 639 878 Calmodulin-binding Proteins AT2G36910 24.111 1.13e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5499 - - gmx:100805474 1578.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5499 1 94408899 94418782 Lja1g5499 1 94408899 94418782 ECH