Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5498 ATGGAAAATGGAAACACACAGAACGAACCTGCGAGGTTCTGGACTCAAGCAAACGCGCTTCTCAGGAAGAATTTAACCTACCAGAAGCGAAACGTGAAGACTACCGTTAGGCTCATCTTGGCCCCCATCATGGTGTGTCTGTTTCTGGTTCTCATTCAAAAACTGCTTGATAACCAACTTGACAAGGCAAAATACACATGTGGTTGTACGTGTGAAAACTCACATGGGGATGGTCAGTGTGTAAAGGAAGTGTGTGGGATTGGGTATTCGGATTTGGACCAAGTTGGCGCGTGCCCCGTTCCTAACCCTCCGAAATGGCCTCCTCTGATGCAATTTCCCGCTTCAAAATACCGAGCTGTGAGAACGGATTTTCTTTCGTTTTCTGATTTTCCAAATGCTTCTTGCCGAACTGGTGGCTCGTGTCCGGTTACTATGTTCTTCACCGGCAATAACCAGTCACTCGGAGAATTTTTGTCTGGGAATATGATCCCAGATACCCTTAGCATAAATACCTCTGATATTGTGGGTAGTTTGGCATCAAATGTCATGGGATCAACATCCTACACAGGGTACACCAATTTTCTAGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAAAGTCAGTGCACACAGCAGAACTCTACATTCTCCATTCCTATCCAGATATCAACAGCTACCAGGCAGCAAGAGGTAAGATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTGAACAATGAGCTATTTAAAGGTTATAGAAAAGGAAACACAGAGAGACAGATCAATGAGATAGCTGCAGGTTATGATTTTCAAAATTCAAATGGGAATATATTTAATGTCACCATATGGTACAACTCAACCTACAGAGATGACACTGGCTCCCGTCCCATTGTATTGGCGCGTATTCCTCGTTCTGTAAATCTGGTATCAAATGCGTACCTTCAATTTCAGCTGGGGCCTGGTACCAAAATGTTGTTTGAGTTTGTAAAGGAAATGCCAAAAACTGAGACCCCAAATAAGTTTGATTTGGCTTCACTTTTGGGAGCTGTCTTCTATACATGGATCATCCTGCAACTTTTTCCCGTTGTCCTGACATCACTAGTTTATGAGAAGCAACAAAAATTAAGGATCATGATGAAAATGCATGGTCTGGGTGATGGGCCATATTGGCTGATTTCGTATGGTTATTTTCTTGCCATATCTGCTATCTACGTGCTGTGTTTTGTAATATTTGGCTCAGTCATAGGGTTGAAGTTCTTCACAATGAATGACTACAGTATCCAATTCGTATTTTATTTCCTCTTTATAAATTTACAAATTTCACTAGCATTTCTATTGGCTTGTCTGTTCTCAAATGTTAAGACGGCTGCAGTATTTGCATATATTGGCGTGTTTGGAACCGGGTCATTGGGCGCCTCTCTTCTCCAATTTTTTGTTCAAGAGAAATCATTTTCAAGAGGGTGGATCATTGTTATGGAGTTATATCCAGGGTTTTCCTTATTTCGAGGGTTATATGAATTTTCTCAATCTTCTTTCACTGGGGATGCTTTGGGGACTCATGGTATGCGGTGGGGAGATTTGAGTGATAGCACAAATGGCATGAAAGAGGTCTTTATTATCATATTCATGGAGTGGATTTTGGCTCTTATGTTCGCTTATTATATGGATCAAGTTTTGACATCAGGATGCGGAAAAAGCCATCTTTTTTTCATGAAAGAATTTCAGAAAAATCGTAGCTCATCTTTTCAGAAGCTTAGTTTCCAAAGGCAGGACTCTAAAGTTTTAGTTGATATGGAGAAACCTGATGTTAATCAAGAGAGGGAGAAGGTGGAGCAACTGATACTTGAACCAACTACTAATCATGCAATAGTATGTGACAACCTAAGAAAGGTCTATCCGGCGAGGGATGGTAACCCAGCAAAATTTGCAGTGAGAGGATTGTCCCTTGCTCTGCCTCAAGGGGAGTGCTTTGGGATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAACATGATGATCGGTCTCACGAAGCCAACCTCTGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACTGATATGGGTGGAATATATACTAGTATGGGTGTATGCCCACAACATGACTTATTGTGGGAAGTTTTGACTGGAAGAGAGCACCTGCTCTTTTATGGCAGACTTAAAAATCTGAAAGGTTCAGCCTTAAAACAGGCAGTGGAAGAATCTTTGAAAAGTGTAAATCTTTTTCACGGAGGAGTTGCTGATAAACAAGCTGGAAAGTACAGCGGCGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTAATAGGAGATCCTAGAGTTGTTTATATGGATGAGCCTAGTACTGGATTAGACCCTGCATCAAGAAACAGCTTATGGAATGTTGTTAAACGCGCAAAACAGAATCGTGCAATCATTCTCACAACACATTCCATGGAAGAGGCAGAAGTCCTATGTGATCGTTTAGGAATATTTGTAGATGGTAGCTTGCAGTGCATAGGAAATCCAAACGAGCTGAAAGGCAGATATGGAGGAACCTATGTGTTCACGATGACAACATCTGTGGATCATGAAAAGGATGTTGAGAACTTGGTGCAGAAGCTTTCCCCAAATGCTAACAAGATTTATCATATCTCTGGTACTCAGAAGTTTGAGTTGCCAAAAGACGATGTTAGAATAGGGAGTGTATTCCGGGCTGTTGAAACTGCAAAGAGAAACTTCACAGTTTCTGCATGGGGTTTAGCTGATACCACACTGGAAGATGTCTTCATTAAGGTTGCACGCGGGGCTAAGGCATTTGACATCTAG 2850 0.4165 MENGNTQNEPARFWTQANALLRKNLTYQKRNVKTTVRLILAPIMVCLFLVLIQKLLDNQLDKAKYTCGCTCENSHGDGQCVKEVCGIGYSDLDQVGACPVPNPPKWPPLMQFPASKYRAVRTDFLSFSDFPNASCRTGGSCPVTMFFTGNNQSLGEFLSGNMIPDTLSINTSDIVGSLASNVMGSTSYTGYTNFLEPAFFSDLPIYYLQSQCTQQNSTFSIPIQISTATRQQEVRCAQGLRLWRNSSSEVNNELFKGYRKGNTERQINEIAAGYDFQNSNGNIFNVTIWYNSTYRDDTGSRPIVLARIPRSVNLVSNAYLQFQLGPGTKMLFEFVKEMPKTETPNKFDLASLLGAVFYTWIILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWLISYGYFLAISAIYVLCFVIFGSVIGLKFFTMNDYSIQFVFYFLFINLQISLAFLLACLFSNVKTAAVFAYIGVFGTGSLGASLLQFFVQEKSFSRGWIIVMELYPGFSLFRGLYEFSQSSFTGDALGTHGMRWGDLSDSTNGMKEVFIIIFMEWILALMFAYYMDQVLTSGCGKSHLFFMKEFQKNRSSSFQKLSFQRQDSKVLVDMEKPDVNQEREKVEQLILEPTTNHAIVCDNLRKVYPARDGNPAKFAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTDMGGIYTSMGVCPQHDLLWEVLTGREHLLFYGRLKNLKGSALKQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNSLWNVVKRAKQNRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPNELKGRYGGTYVFTMTTSVDHEKDVENLVQKLSPNANKIYHISGTQKFELPKDDVRIGSVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARGAKAFDI* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5498 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 857 IPR027417 -
Lja1g5498 949 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524
Lja1g5498 949 SMART AAA_5 659 842 IPR003593 -
Lja1g5498 949 Gene3D - 619 893 IPR027417 -
Lja1g5498 949 CDD ABC_subfamily_A 633 854 - -
Lja1g5498 949 Pfam ABC transporter 651 795 IPR003439 GO:0005524
Lja1g5498 949 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 9 948 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lja1g5498 949 Pfam ABC-2 family transporter protein 267 543 - -
Lja1g5498 949 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 9 948 - -
Lja1g5498 949 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 866 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5498 Lja-Chr1 94393595 94404676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5498 605 877 Calmodulin-binding Proteins AT2G36910 22.727 4.80e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5498 - - gmx:100805474 1566.59