Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5497 ATGAGCACCACCACCGTCGCCGCCACCCGCAGCGGTTTCCCCCTGGTGTTACAACAATACACGGCGCTGTTAAGAAAAAACGCGCTGCTCTCATGGCGGAGCAAGAGAGCGACGCTGCTGCAGGTACTCTCACCACTCATCTTCATCTTCCTCATATTCGCGGTGGACAAAGCAATCGAAGCGCAAACCTCAACCTCATCCCAATACAAGAGCGTGAAGGATCCTCCGTCGCAACCGTCTCCTCCGATTCCTCCATGCGAGGAGAAATTCTTCATCAAGCTTCCCTGCTACGACTTCGTTTGGAGCGGCGACTCGAACCCCAAGTTTAGCACCATCGTTCGCCGCATCATGAGCAATAACCCTGGGAGGCCGATTCCGGCGTCGAAGGTGAAGAGTTTCAGTGATAAAATGGAGGTGGATTCGTGGCTGTTGAGTAACCCTATGCATTGTCCTGGTGCGCTTCATTTTGCTGAGAAGAACAGCACTGTGTTCAGTTATGGGTTGCAGACGAATTCAACCGCTGTGCAGAAGAGAGGGAAGTATGAGGACCCTACTGCTTCGTTTCAGCTCCCTCTTCAGCTCGCGGCGGAGCGTGAAATTGCCAGATACCTGATTGGAGACCCGAATTTCAGCTGGAATGTGTTTTTGAAGGAATTCGCGCACCCGGCTCAGAGTCCTTTTTCTGCTGTGGGGACGATAGGACCTGCATTTTTTCTCGCGATTGCCATGTTTAATTTCGTTCTTCAGATGAGCGCTTTGGTTGGGGAGAAAGAGCTTAAGCTTCGCCAGGCAATGAACGTGATGGGCCTTTACGACTCTGCCTACTGGTTATCCTGGCTCACCTGGGAGGCTGTTGTTACCATCTTATCATCCCTTCTCATAGTTTTGTTTGGGATGATGTTTCAGTTTGATTTTTTCTTGAAGAACAGTTTTGCGGTTGTATTTGTTTTGTTCTTCCTGTTTGAACTCAACATGACTGGCTTGGCCTTCATGTTATCTGCTTTCATTAGTAAATCATCATCGGCGACAACTGTGGGCTTCTCCATATTTATTGTGGGCTTTGTGACTCAGCTCGTGGTACAAGCAGGATTTCCTTACACAGATAGCATCTCTAGCACTTTCCGTAGCATCTGGTCATTGTTTCCGCCTAATCCTTTTGCTCAAGCTCTGACTCTGCTTTCAGAGGCAGTTGCAACTGCTGAAGATGATGGTGTTAGCTGGAGTAGGCGAGGAGAATGTGCTCCCAACGATGAAGAATGTGTGATAACAATTAATGATATTTATAGTTGGCTTCTGGCTACGTTCTTTATATGGTTTATTCTGGCCATCTACTTTGACAATATTATCCCAGATTCATCGGGTGTGAGGAAGTCCGTGTTATACTTTCTAAATCCCAGTTATTGGACAGGAAAAGGAGGACAGAAAGTGAAAGAGGGTGGGGTTTGTAGTTGCTTCGTTTCAGTCCCACATGCAGAGCATAGTACACCAGATGATGACGATGTCCTTGAAGAAGAAAATGCTGTGAAACAGAAACTAGCACAAGGTGTGGTTGACACAAATGTAGCTGTTCAAATACATGGCATTGTGAAGACATATTCTGGTGCATTTAACATTGGTTGCTGCTGTAAATGTAAAAGAAGTACTCCTTACCATGCCATCAAGGGGTTGTGGGTGAACTTTGCAAAGGATCAGTTGTTTTGTCTTTTAGGACCCAATGGAGCTGGCAAGACTACAGCTATCAATTGTTTGACAGGGATAATTCCAGTAACAGATGGAGATGCATTAATTTATGGACATTCCATCCGAAGCTCCATAGGGATGTCAAACATTCGAAAGCTTATCGGAGTATGCCCCCAGTTTGATATCCTATGGGATGCACTATCTGGCCAAGAACACCTCCAACTCTTTGCTAGTATGAAAGGCCTACCCCCAACTTCCATAAAATCAATTACCCATACATCATTGGCTGAGGTGAGACTTACAGATGCAGCCAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAGCGTCGTCTCAGTGTTGCAATTGCTCTTATTGGTGACCCTAAATTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACGAGGAGGCATGTGTGGGACATAATTGAAAATGCAAAAAGAGGGCGTGCCATTGTTCTTACAACACATTCTATGGAAGAAGCTGACATTTTAAGTGACCGCATAGGAATCATGGCAAAGGGAAGGCTCCGCTGCATTGGCACCTCAATCAGATTAAAGTCACGCTTTGGAACTGGTTTTATTGCTAATATCAGCTTCAATGGAAACAATATTGAAAACAATCCTGCAAATGGAGATGCAATATCACCAGAACATCGTGAGGCTGTAAAGCAATTCTTCAAGAATCATTTAGATGTAGTGCCAAAAGAGGAGAACAATAACTTCCTTACTTTTGTGATTCCTCATGACAGAGAGGCACGCTTGACGAACTTTTTTTCGGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGACATTCAGCTTGGTCTCACAACTCTTGAAGAAGTCTTCTTGAACATTGCAAAACAAGCAGAGCTGGAAAGTGCTGCAGCTGAAGGGAGCTTAGTAACTCTGACTTTAACATCTGGAGAGTCTGTTCAGATTCCTGTAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCAGAAAACCCCACAGGTTGTATGGTAGAAGTATACTGGGAGCAAGATGATACTGGTGCCCTATGTATTAGTGGTCACTCTCAGAAAGTTCCAATTCCTCAAAGTGTTGAGCTATCAACAACTCCTACTACAAGACCCCATAGAAATTTAGGCCGCTCAGAATCAGTACATGGGGTTGTGATTGATCCCAGTCAAGTTAGCTCAGTCAATTTTCAGTGA 2919 0.4515 MSTTTVAATRSGFPLVLQQYTALLRKNALLSWRSKRATLLQVLSPLIFIFLIFAVDKAIEAQTSTSSQYKSVKDPPSQPSPPIPPCEEKFFIKLPCYDFVWSGDSNPKFSTIVRRIMSNNPGRPIPASKVKSFSDKMEVDSWLLSNPMHCPGALHFAEKNSTVFSYGLQTNSTAVQKRGKYEDPTASFQLPLQLAAEREIARYLIGDPNFSWNVFLKEFAHPAQSPFSAVGTIGPAFFLAIAMFNFVLQMSALVGEKELKLRQAMNVMGLYDSAYWLSWLTWEAVVTILSSLLIVLFGMMFQFDFFLKNSFAVVFVLFFLFELNMTGLAFMLSAFISKSSSATTVGFSIFIVGFVTQLVVQAGFPYTDSISSTFRSIWSLFPPNPFAQALTLLSEAVATAEDDGVSWSRRGECAPNDEECVITINDIYSWLLATFFIWFILAIYFDNIIPDSSGVRKSVLYFLNPSYWTGKGGQKVKEGGVCSCFVSVPHAEHSTPDDDDVLEEENAVKQKLAQGVVDTNVAVQIHGIVKTYSGAFNIGCCCKCKRSTPYHAIKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGIIPVTDGDALIYGHSIRSSIGMSNIRKLIGVCPQFDILWDALSGQEHLQLFASMKGLPPTSIKSITHTSLAEVRLTDAAKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFNGNNIENNPANGDAISPEHREAVKQFFKNHLDVVPKEENNNFLTFVIPHDREARLTNFFSELQDREEEFGISDIQLGLTTLEEVFLNIAKQAELESAAAEGSLVTLTLTSGESVQIPVGARFVGIPGTESAENPTGCMVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRNLGRSESVHGVVIDPSQVSSVNFQ* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5497 972 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 11 939 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lja1g5497 972 MobiDBLite consensus disorder prediction 938 957 - -
Lja1g5497 972 CDD ABC_subfamily_A 523 757 - -
Lja1g5497 972 Pfam ABC transporter 556 698 IPR003439 GO:0005524
Lja1g5497 972 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 523 769 IPR003439 GO:0005524
Lja1g5497 972 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 11 939 - -
Lja1g5497 972 ProSitePatterns ABC transporters family signature. 671 685 IPR017871 GO:0005524
Lja1g5497 972 Pfam ABC-2 family transporter protein 37 444 - -
Lja1g5497 972 Gene3D - 516 775 IPR027417 -
Lja1g5497 972 SMART AAA_5 562 746 IPR003593 -
Lja1g5497 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 751 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5497 Lja-Chr1 94364306 94371958 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5497 566 768 Calmodulin-binding Proteins AT2G36910 23.474 4.65e-10 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5497 1 94364306 94371958 Lja1g5497 1 94364306 94371958 ECH