Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5495 ATGTCAAACATTCGAAAGCTTATCGGAGTATGCCCCCAGTTTGATATCCTATGGGATGCACTATCTGGCCAAGAACACCTCCAACTCTTTGCTAGTATGAAAGGCCTACCCCCAACTTCCATAAAATCAATTACCCATACATCATTGGCTGAGGTGAGACTTACAGATGCAGCCAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAGCGTCGTCTCAGTGTTGCAATTGCTCTTATTGGTGACCCTAAATTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACGAGGAGGCATGTGTGGGACATAATTGAAAATGCAAAAAGAGGGCGTGCCATTGTTCTTACAACACATTCTATGGAAGAAGCTGACATTTTAAGTGACCGCATAGGAATCATGGCAAAGGGAAGGCTCCGCTGCATTGGCACCTCAATCAGATTAAAGTCACGCTTTGGAACTGGTTTTATTGCTAATATCAGCTTCAATGGAAACAATATTGAAAACAATCCTGCAAATGGAGATGCAATATCACCAGAACATCGTGAGGCTGTAAAGCAATTCTTCAAGAATCATTTAGATGTAGTGCCAAAAGAGGAGAACAATAACTTCCTTACTTTTGTGATTCCTCATGACAGAGAGGCACGCTTGACGAACTTTTTTTCGGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGACATTCAGCTTGGTCTCACAACTCTTGAAGAAGTCTTCTTGAACATTGCAAAACAAGCAGAGCTGGAAAGTGCTGCAGCTGAAGGGAGCTTAGTAACTCTGACTTTAACATCTGGAGAGTCTGTTCAGATTCCTGTAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCAGAAAACCCCACAGGTTGTATGGTAGAAGTATACTGGGAGCAAGATGATACTGGTGCCCTATGTATTAGTGGTCACTCTCAGAAAGTTCCAATTCCTCAAAGTGTTGAGCTATCAACAACTCCTACTACAAGACCCCATAGAAATTTAGGCCGCTCAGAATCAGTACATGGGGTTGTGATTGATCCCAGTCAAGTTAGCTCAGTCAATTTTCAGTGA 1101 0.4269 MSNIRKLIGVCPQFDILWDALSGQEHLQLFASMKGLPPTSIKSITHTSLAEVRLTDAAKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFNGNNIENNPANGDAISPEHREAVKQFFKNHLDVVPKEENNNFLTFVIPHDREARLTNFFSELQDREEEFGISDIQLGLTTLEEVFLNIAKQAELESAAAEGSLVTLTLTSGESVQIPVGARFVGIPGTESAENPTGCMVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRNLGRSESVHGVVIDPSQVSSVNFQ* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5495 366 PANTHER ABC TRANSPORTER A FAMILY MEMBER 9 1 349 - -
Lja1g5495 366 Pfam ABC transporter 4 92 IPR003439 GO:0005524
Lja1g5495 366 MobiDBLite consensus disorder prediction 332 351 - -
Lja1g5495 366 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1 349 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lja1g5495 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 145 IPR027417 -
Lja1g5495 366 CDD ABC_subfamily_A 1 151 - -
Lja1g5495 366 Gene3D - 1 169 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5495 Lja-Chr1 94205231 94208050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5495 61 162 Calmodulin-binding Proteins AT2G36910 26.471 1.44e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5495 - - gmx:100786538 637.876