Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5494 ATGGGGAAATCACCCGGAAAATGGATCAAAACTGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGCTTGTTAACAAAAAGGAAGCAGTGGTTGCTTCTAATGTGTCGGATAATGGTTTGGCTTTTGATCCAACCCTCACTAATATTGCAAGAAATGAGGAGGACCAAGAAGTGGAGAATGAAGAATCTGAAAATCTTGCACGTGGGAATCAAGAAATAGACATCATGGAATCTGTTGACCAAGATGCACCACCCGATCCTGAGGTAATCAGACTGGAGGAAGCTGCAATACATGCACAAGCTGCTTTCAGGGGTTACATGGCTCGCAGGGCATATAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCATTTGGTTAGGAGACAAGCTGTCGCTACATTATGCTGTATGCATGGGATTGTAAAGTTACAGGCACTTGTTCGTGGCGGGAGAGTTAGACAATCTGATGTTGGATTTGCAATCCATGAGAAGTGCAATCTATTTAAGACTCTGGATGGCAGACTTGTTGAGTCAGTTGGTGTTTCCACAAAAATTTCAAAGCAGTCTGCAAATACTTTCGTCTGTAAGCTTCTTTCTTCATCAACTACAATAATGGCTCTGCACCTGCAGTATGTTGGCGGGGATCCAAATTCAGTGTCAAGTTGGTTGGAGCGCTGGTCAGCATCATACTTTTGGAAACCACTTCCCCAACTCAAGAAAATTCGAGACTCGAAATCTCACAGAAAGCAAAGTAGTATTTCAATTGGAGAAGCTCAAATCAGCAAGTCGAAACGTACCAACAGGAAACTTCCTACTGCTAATTTTGAATCAGTCCCCTCGCATACTAATCCAGAATTTGAGAAGCCGAAACGTAATTTCAGGAAAATCTCAAGCCAACTGTCAGATCCAGATCAGGAAAATCCACAAAGTGTTCTTGAAAAGGTTAAACGGAACTTGAGAAAGATTCATAATCCTGTTGTTGAGAATGCTATTCTGTCCGAAGTTGAATTTGAGACCGCAAAGCAGCACTTGGTAAAGACAACTGTTTCAGAACGAGGGCTCATTACTTCTAATGAAAAGATCAAGAAGGAAGCAACATTTTCCATGTCTAGTGTACCTGATGTAGAAATCACTCCAACACTGTCTGATAACAAGGAAGTATCTGACATTTCAAGCAGTTATACAACAGAATCAAAGCCCTTGACAGAGACTAAAACTAAAGATAAATGCACGTCCGGTGGTGAAGTTAAAAATGAGTTGTTCTATGTACCGGAGATTAATTTTAAAGATGCAAACTCTCCATCAAAAAATGGACATTTGGTTCAAGTTGAAGATCTAACAGCTAATAAGAACAAGAAATCTACCCGGAAAGCCTCTAAGCAGGAACATGCAGAGAATGGCTTACAGAATAGTCCTAAATTGCCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGCGGGCACAAGATTCCCCGAGGTTCGAGCAAGATGTAAGTGAGAGAAATAGCCCTGCTGGGCGACACTCTATACCATCTTCAACTAACCACAAAATTAGTTCGCATTCACCCGGGACACGGAGATCAGTTCAAACAGATGGCAGAGGGGGGCATAGAAATGAAAGGACTATATCATCTTCTAGAGGTGGGAATGGAATGGTAGTTCAAGAAGAGTGGAGGAGGTGA 1722 0.417 MGKSPGKWIKTVLFGKKSSKSNISKGREKLVNKKEAVVASNVSDNGLAFDPTLTNIARNEEDQEVENEESENLARGNQEIDIMESVDQDAPPDPEVIRLEEAAIHAQAAFRGYMARRAYRALKGIIRLQALIRGHLVRRQAVATLCCMHGIVKLQALVRGGRVRQSDVGFAIHEKCNLFKTLDGRLVESVGVSTKISKQSANTFVCKLLSSSTTIMALHLQYVGGDPNSVSSWLERWSASYFWKPLPQLKKIRDSKSHRKQSSISIGEAQISKSKRTNRKLPTANFESVPSHTNPEFEKPKRNFRKISSQLSDPDQENPQSVLEKVKRNLRKIHNPVVENAILSEVEFETAKQHLVKTTVSERGLITSNEKIKKEATFSMSSVPDVEITPTLSDNKEVSDISSSYTTESKPLTETKTKDKCTSGGEVKNELFYVPEINFKDANSPSKNGHLVQVEDLTANKNKKSTRKASKQEHAENGLQNSPKLPSYMAATESAKAKLRAQDSPRFEQDVSERNSPAGRHSIPSSTNHKISSHSPGTRRSVQTDGRGGHRNERTISSSRGGNGMVVQEEWRR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5494 573 MobiDBLite consensus disorder prediction 440 573 - -
Lja1g5494 573 MobiDBLite consensus disorder prediction 441 459 - -
Lja1g5494 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 141 IPR027417 -
Lja1g5494 573 Gene3D - 97 145 - -
Lja1g5494 573 Pfam Protein of unknown function (DUF4005) 469 548 IPR025064 -
Lja1g5494 573 MobiDBLite consensus disorder prediction 389 423 - -
Lja1g5494 573 MobiDBLite consensus disorder prediction 253 302 - -
Lja1g5494 573 MobiDBLite consensus disorder prediction 262 292 - -
Lja1g5494 573 MobiDBLite consensus disorder prediction 516 542 - -
Lja1g5494 573 ProSiteProfiles IQ motif profile. 123 150 IPR000048 GO:0005515
Lja1g5494 573 SMART iq_5 121 142 IPR000048 GO:0005515
Lja1g5494 573 SMART iq_5 98 120 IPR000048 GO:0005515
Lja1g5494 573 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Lja1g5494 573 PANTHER IQ-DOMAIN 5-RELATED 1 561 - -
Lja1g5494 573 MobiDBLite consensus disorder prediction 389 411 - -
Lja1g5494 573 PANTHER PROTEIN IQ-DOMAIN 31 1 561 - -
Lja1g5494 573 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Lja1g5494 573 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Lja1g5494 573 MobiDBLite consensus disorder prediction 499 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5494 Lja-Chr1 94117053 94123760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5494 1 573 IQD Protein Family AT1G74690 40.968 9.53e-108 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5494 - - gmx:100786022 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5494 1 94117053 94123760 Lja4g2164 4 23297975 23305691 ECH
Lja2g1119 2 10610632 10616802 Lja1g5494 1 94117053 94123760 ECH
Lja1g5494 1 94117053 94123760 Lja1g5494 1 94117053 94123760 ECH