Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5491 ATGGAATTTGGTTCAGGAAGATCTGGTCATGATGAAGGTGAAGGAGCAAAGGTCGAGAGGAGAAGTCAATCTAGTGGTGGTGGTGGTGGTGGTGAAGATCATCGTGAACAAGAGACTGTTGTTACCCAGGAGCCACCCATGACTGATATCGCAAGATCAATGGAAGGAGCCGGGCCAAATACTTCCTCACCCAAAAAGGAAGAGGTTGATGAACTTGAAAATACCAAAGCTGAAATGGGTGGAGTGATACAAGAAAATCAAAGATTGAAGACGTGTTTGAACCGAATACTGAATGATTACCGCACACTCCAAATGCAATTCCACAACATAGCTGAACAAGACACAAAAACTTCTTCTGATAAAGCAAACAACAACAACCACAATCAAGATAAAATGATGGAGGAATCCGAGCTAGTTTCTCTCAGTCTTGGAAGGCTTCCAAGTAATCCAAGAAACAATGAGAAAGCTAAAGTTATCTCTAGACCATTGAAAGAGGAAGAGAATAGGGAAGGTTTAGCACTTGGACTTGACTGCAAATTTGAAACATCAAAATCTGGAAGCACTGACAATAGCTCTGAATTGCCATTGAAGGAAGATGTTGGGGAGACTTGGAAACCAAGTAAGGTTGACAAGACATCAATTACAATTCCTGGAGAGGATGAAGTTTCTCAACAAAATAATCCTGCAAAGAAAACTAGAGTTTGTGTGAGAGCAAGATGTGACACCCTCACTATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGAAACCCTTGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCCTCTTGTCCTGTCAGAAAGCAGGTGCAAAGATGTGCTCAGGACATGTCCATTTTGATCACCACCTACGAAGGGAACCACAACCACCCTCTTCCTCTTTCCGCCACCGCCATGGCCTCCACCACTTCCGCCGCTGCCTCCATGCTACTGTCCGGCTCATCAACCTCCCACGCCGGATCAACAACCGCAGATCTTCATGGAATGAACTTTTGTCTTTCCGACGGATCCAAATCAAAGCAATTTTACATGTCTCATCCTGCACTATCACCTTCACCTTCACACCCCACCATCACTCTTGACCTCACTACTTCCAATAATAATCTACCTTTATCCTCACTTCCTTTTGGTAGATTCACTTCAAATTTCAACAACCCCCCAAGATACCCTTCTTCCACAAGTTTGAACTTCAGTAACTCAGAGTCCAATGCAATGTCTTGGAGCAATGGCTTCCTCAGCTACAACACTTCTCTACCATATAACAACAACAACATCCTTAGCAACCCTGGACGACAACAACAACAACAACCAATGGAAAATAACATCTTGAATTCTTACATGCAAAGGAACAATAACAATGTTCCTACAGACACTATTGCGGAGGCAACGAAAGCAATCACAGCAGATCCAACTTTTCAGTCAGCTTTGGCAGCAGCACTTACATCAATCATTGGCAGTACTGGATCAAGCACTACTACTCAAGGATTAAACCAGAATAATGTTGGAGAGATTTTGGGTAAGAAAAGGAAATGGGAGGAGTTGTTTCCATCATCTTCTTCTACTTTACCATTTTCTATCCCCAAAAGCGCGTCTGCGTCTCCGGATGATAATAGAGACTAG 1659 0.4328 MEFGSGRSGHDEGEGAKVERRSQSSGGGGGGEDHREQETVVTQEPPMTDIARSMEGAGPNTSSPKKEEVDELENTKAEMGGVIQENQRLKTCLNRILNDYRTLQMQFHNIAEQDTKTSSDKANNNNHNQDKMMEESELVSLSLGRLPSNPRNNEKAKVISRPLKEEENREGLALGLDCKFETSKSGSTDNSSELPLKEDVGETWKPSKVDKTSITIPGEDEVSQQNNPAKKTRVCVRARCDTLTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMSILITTYEGNHNHPLPLSATAMASTTSAAASMLLSGSSTSHAGSTTADLHGMNFCLSDGSKSKQFYMSHPALSPSPSHPTITLDLTTSNNNLPLSSLPFGRFTSNFNNPPRYPSSTSLNFSNSESNAMSWSNGFLSYNTSLPYNNNNILSNPGRQQQQQPMENNILNSYMQRNNNNVPTDTIAEATKAITADPTFQSALAAALTSIIGSTGSSTTTQGLNQNNVGEILGKKRKWEELFPSSSSTLPFSIPKSASASPDDNRD* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5491 552 MobiDBLite consensus disorder prediction 1 72 - -
Lja1g5491 552 MobiDBLite consensus disorder prediction 1 19 - -
Lja1g5491 552 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 43 551 - -
Lja1g5491 552 Gene3D WRKY domain 229 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g5491 552 MobiDBLite consensus disorder prediction 529 552 - -
Lja1g5491 552 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 43 551 IPR044810 GO:0003700
Lja1g5491 552 SUPERFAMILY WRKY DNA-binding domain 238 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g5491 552 MobiDBLite consensus disorder prediction 529 545 - -
Lja1g5491 552 SMART WRKY_cls 245 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g5491 552 Pfam WRKY DNA -binding domain 246 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g5491 552 ProSiteProfiles WRKY domain profile. 240 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5491 Lja-Chr1 94054460 94058737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5491 79 501 WRKY Transcription Factor Family AT5G15130 45.022 4.42e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g5491 WRKY 8.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5491 - - gmx:100804403 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5491 1 94054460 94058737 Lja4g2169 4 23367900 23372203 ECH
Lja1g2885 1 34823187 34832763 Lja1g5491 1 94054460 94058737 ECH
Lja2g1115 2 10576147 10578739 Lja1g5491 1 94054460 94058737 ECH
Lja1g5491 1 94054460 94058737 Lja1g5491 1 94054460 94058737 ECH